Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3681 114 1e-20 seq2423 114 1e-20 seq1493 87.8 2e-12 seq2639 84.2 2e-11 seq3708 82.4 7e-11 seq99 82.4 7e-11 >seq3681 Length=661693 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 18005 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 18064 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || ||||| || || |||||||||||| Sbjct 18065 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 18124 Query 27108 CAGCGT 27113 || ||| Sbjct 18125 CAACGT 18130 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||||||||||||||| ||||| |||||| Sbjct 18397 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 18456 Query 27108 CAGCG 27112 ||||| Sbjct 18457 CAGCG 18461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | || || | ||||| ||||| || Sbjct 10035 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 10094 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 10095 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 10154 Query 27108 CAGCGT 27113 || ||| Sbjct 10155 CAACGT 10160 >seq2423 Length=9717 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 3611 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 3552 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || ||||| || || |||||||||||| Sbjct 3551 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 3492 Query 27108 CAGCGT 27113 || ||| Sbjct 3491 CAACGT 3486 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||||||||||||||| ||||| |||||| Sbjct 3219 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 3160 Query 27108 CAGCG 27112 ||||| Sbjct 3159 CAGCG 3155 >seq1493 Length=366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| |||||||| | || || | ||||| ||||| || Sbjct 239 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATCT 298 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 299 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 358 Query 27108 CAGCGT 27113 || ||| Sbjct 359 CAACGT 364 >seq2639 Length=264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || |||||||| | || || | ||||| ||||| || Sbjct 137 ATGCAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 196 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 197 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 256 Query 27108 CAGCGT 27113 || ||| Sbjct 257 CAACGT 262 >seq3708 Length=1771 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 || ||||| || ||||| |||||||| | || || | ||||| ||||| || || | Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || |||| || ||| ||||||||||| |||||||| || ||||| ||||| || ||| Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 27114 TTAATATACGCCGGCAAACAATT 27136 | || | || || | | |||| Sbjct 1651 CTGATTTTTGCTGGTATAGAATT 1629 >seq99 Length=156819 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | ||||| || || || Sbjct 39968 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 39909 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| ||||||||||| || |||||||| ||||| ||||| Sbjct 39908 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 39849 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 39848 CAACGATTGATAT 39836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434895979956480