Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1327 118 9e-22 seq3614 87.8 2e-12 >seq1327 Length=48099 Score = 118 bits (130), Expect = 9e-22 Identities = 238/349 (68%), Gaps = 12/349 (3%) Strand=Plus/Plus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 ||||| ||||| ||||| || |||||||| | || | |||||| | ||| || || Sbjct 21428 ATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATT 21487 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | || || || |||||||| |||||||| || || || ||||| || || || Sbjct 21488 GACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 21547 Query 4704 CCGAA---CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760 | || ||| ||| | ||| ||||| || ||||||| ||||||||||| Sbjct 21548 CAAAATGGCGA-CTGACG--GTCACCGATCCAGCGCAAAGCCCAGTCTGCTTTTTTCTTC 21604 Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGA 4817 ||||||||||| || | || ||||| || || | || || | || || | Sbjct 21605 ACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCAC---GCTCCACCGGATCACGG 21661 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || ||||| || | ||||| |||||||| ||||| | ||||||||| ||||| || Sbjct 21662 ATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATGGCAATTTGG 21721 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || | | || || |||||||||| ||| | |||||| Sbjct 21722 AAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATC 21770 >seq3614 Length=257007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 31778 ACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGA 31837 || || ||||||||| || | ||| || ||||| || || || || ||| ||||||| Sbjct 80675 ACTGACATTCAAATTGCTGTTCCTGTCGGCTGCTATGGTCGCATTGCACCTCGATCTGGC 80734 Query 31838 TTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGA 31897 ||||| | || ||| |||||| | || ||||| ||| ||||| |||| || || || Sbjct 80735 TTGGCTTTGAAGCACGGCATCGACATCGGCGCGGGCGTTGTAGATGCAGATTACAGGGGC 80794 Query 31898 AACGTTGGAATTGTGTTGTTTAATTTTGGAGA--AAAATCATACAGTATAAAAAAGGGCG 31955 || |||||| | | | || |||||||| || || || | || ||| || | Sbjct 80795 AATGTTGGAGTAATTGTTTTCAATTTTGGCGACCAAGATTTTCACGTG--AAACGTGGTG 80852 Query 31956 ATAGGGTAGCTCAACTAATTTGCGAA 31981 || | | |||||||||||||| ||| Sbjct 80853 ATCGAATTGCTCAACTAATTTGTGAA 80878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427028135953292