Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 95.1 3e-14
seq2781 95.1 3e-14
seq2423 95.1 3e-14
seq1681 95.1 3e-14
seq1996 86.0 1e-11
seq99 86.0 1e-11
seq3708 84.2 5e-11
>seq3681
Length=661693
Score = 95.1 bits (104), Expect = 3e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
|||| || || ||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
|| || ||||||| | || || || || || | ||| ||||| | |||||||| ||
Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 10347
Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || | ||||||||| || || ||||||
Sbjct 10346 CCGGTAAGAGTCTTAACAAAAATTTGCATT 10317
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTTC 18001
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | ||| || || || || || |
Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 18989 GTCTTAACGAAAATTTGCATT 18969
>seq2781
Length=253
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 66
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||||| || ||||||
Sbjct 65 GTAAGGGTCTTAACGAAAATTTGCATT 39
>seq2423
Length=9717
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
||| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 2440
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||||||||| || ||||||
Sbjct 2441 GTAAGGGTCTTAACGAAAATTTGCATT 2467
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101
| ||| || || |||||||||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613
>seq1681
Length=34527
Score = 95.1 bits (104), Expect = 3e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
|||| || || ||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
|| || ||||||| | || || || || || | ||| ||||| | |||||||| ||
Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 30013
Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || | ||||||||| || || ||||||
Sbjct 30012 CCGGTAAGAGTCTTAACAAAAATTTGCATT 29983
>seq1996
Length=320
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| || ||||| || || || ||
Sbjct 184 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 243
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 244 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 303
Query 283077 AAAGTCTTAACGAATAT 283093
| ||||||||| || ||
Sbjct 304 AGAGTCTTAACAAAAAT 320
>seq99
Length=156819
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 40852
Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||| | | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 40853 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 40912
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||||||||||||
Sbjct 40913 AAGTGTCTTCACGAATATCTGCAT 40936
>seq3708
Length=1771
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || || || ||||||||||| || || ||||| || ||||| || || || ||
Sbjct 1352 TTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 1411
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 1412 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 1471
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 1472 AGAGTCTTAACAAAAATTTGCATT 1495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046683891609096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |