Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq99 102 2e-16 seq1681 98.7 2e-15 seq3708 95.1 3e-14 seq3681 95.1 3e-14 seq2639 91.5 4e-13 seq1493 91.5 4e-13 seq3029 89.7 1e-12 seq2423 89.7 1e-12 >seq99 Length=156819 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| || || || |||||||| || || || || || | Sbjct 40944 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 40885 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || |||||||||||||| || || ||| || |||||||| || ||||| || |||| Sbjct 40884 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 40825 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 | || |||||| || | ||||| || || || Sbjct 40824 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 40794 >seq1681 Length=34527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 29704 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 29763 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| || ||||||||||| || || || |||||| Sbjct 29764 ACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 29823 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 29824 CGTCTGATTTTTGCTGG 29840 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 29987 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 30046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 30047 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 30106 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 30107 CGTTTGATTTTTGCTGGTAA 30126 >seq3708 Length=1771 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 1491 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 1432 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| |||||| Sbjct 1431 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAGCAA 1372 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || ||||| || || Sbjct 1371 CGTTTGATTTTCGCTGGTAA 1352 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||| || || ||||| || || |||||||||||| | || || ||| || || || Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || ||||| || ||| || ||||| || ||||||||||| || || || |||||||| Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 178047 CTTATCTTCGCCGG 178060 || || || || || Sbjct 1651 CTGATTTTTGCTGG 1638 >seq3681 Length=661693 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 10038 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 10097 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 10098 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 10157 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 10158 CGTCTGATTTTTGCTGG 10174 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 18340 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 18399 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| ||||||||||| || || ||||| || || Sbjct 18400 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAACAG 18459 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 18460 CGGCTTATTTTTGCTGG 18476 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 19253 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 19312 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || || || |||||| Sbjct 19313 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 19372 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 19373 CGTCTGATTTTTGCTGG 19389 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||||||||| || || ||||| || || || || |||||| Sbjct 18002 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 18058 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||| || || || || || || |||||||| ||||| ||||| || || Sbjct 18059 CCCTCTGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 18118 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || ||||| || || || || || || Sbjct 18119 GATCAACAACGTCTGATTTTTGCTGGTAA 18147 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 10321 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 10380 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 10381 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 10440 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 10441 CGTTTGATTTTTGCTGGTAA 10460 >seq2639 Length=264 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || |||||||||||| | || || ||| || || Sbjct 140 CAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 199 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || ||||| || ||| Sbjct 200 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 259 Query 178044 CGACT 178048 || || Sbjct 260 CGTCT 264 >seq1493 Length=366 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| |||||| | || || ||| || || Sbjct 242 CAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATCTGAT 301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || ||||| || ||| Sbjct 302 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 361 Query 178044 CGACT 178048 || || Sbjct 362 CGTCT 366 >seq3029 Length=236 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 10 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 69 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || || || |||||| Sbjct 70 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 129 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 130 CGTCTGATTTTTGCTGG 146 >seq2423 Length=9717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 3276 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 3217 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| ||||||||||| ||||| || || || || Sbjct 3216 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 3157 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 3156 CGGCTTATTTTTGCTGG 3140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203667596348056