Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq99 102 2e-16
seq1681 98.7 2e-15
seq3708 95.1 3e-14
seq3681 95.1 3e-14
seq2639 91.5 4e-13
seq1493 91.5 4e-13
seq3029 89.7 1e-12
seq2423 89.7 1e-12
>seq99
Length=156819
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| || || || |||||||| || || || || || |
Sbjct 40944 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 40885
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || || ||| || |||||||| || ||||| || ||||
Sbjct 40884 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 40825
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 40824 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 40794
>seq1681
Length=34527
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 29704 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 29763
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| |||||||| || ||||||||||| || || || ||||||
Sbjct 29764 ACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 29823
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 29824 CGTCTGATTTTTGCTGG 29840
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 29987 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 30046
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 30047 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 30106
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 30107 CGTTTGATTTTTGCTGGTAA 30126
>seq3708
Length=1771
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 1491 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 1432
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| ||||||
Sbjct 1431 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAGCAA 1372
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || ||||| || ||
Sbjct 1371 CGTTTGATTTTCGCTGGTAA 1352
Score = 89.7 bits (98), Expect = 1e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
||||| || || ||||| || || |||||||||||| | || || ||| || || ||
Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|| ||||| || ||| || ||||| || ||||||||||| || || || ||||||||
Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652
Query 178047 CTTATCTTCGCCGG 178060
|| || || || ||
Sbjct 1651 CTGATTTTTGCTGG 1638
>seq3681
Length=661693
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 10038 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 10097
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || || || ||||||
Sbjct 10098 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 10157
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 10158 CGTCTGATTTTTGCTGG 10174
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 18340 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 18399
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| || || ||||| || ||
Sbjct 18400 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAACAG 18459
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 18460 CGGCTTATTTTTGCTGG 18476
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 19253 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 19312
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 19313 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 19372
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 19373 CGTCTGATTTTTGCTGG 19389
Score = 87.8 bits (96), Expect = 4e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||||||||| || || ||||| || || || || ||||||
Sbjct 18002 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 18058
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||| || || || || || || |||||||| ||||| ||||| || ||
Sbjct 18059 CCCTCTGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 18118
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| || ||||| || || || || || ||
Sbjct 18119 GATCAACAACGTCTGATTTTTGCTGGTAA 18147
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 10321 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 10380
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 10381 ACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 10440
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 10441 CGTTTGATTTTTGCTGGTAA 10460
>seq2639
Length=264
Score = 91.5 bits (100), Expect = 4e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || || || || |||||||||||| | || || ||| || ||
Sbjct 140 CAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 199
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || ||||| || |||
Sbjct 200 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 259
Query 178044 CGACT 178048
|| ||
Sbjct 260 CGTCT 264
>seq1493
Length=366
Score = 91.5 bits (100), Expect = 4e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || ||||| |||||| | || || ||| || ||
Sbjct 242 CAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATCTGAT 301
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || ||||| || ||||||||||| || ||||| || |||
Sbjct 302 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 361
Query 178044 CGACT 178048
|| ||
Sbjct 362 CGTCT 366
>seq3029
Length=236
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 10 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 69
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 70 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 129
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 130 CGTCTGATTTTTGCTGG 146
>seq2423
Length=9717
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 3276 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 3217
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| || || || ||
Sbjct 3216 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 3157
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 3156 CGGCTTATTTTTGCTGG 3140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203667596348056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |