Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq116 89.7 1e-12
>seq116
Length=132002
Score = 89.7 bits (98), Expect = 1e-12
Identities = 221/333 (66%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801
|| || || || |||||||| || ||| | || || | || | | || || |||
Sbjct 12441 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 12382
Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861
|| ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || |
Sbjct 12381 CCAATCGGTAGCAATACGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 12322
Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921
|| || | | || || || ||||||||||| || ||||| ||||| |||||
Sbjct 12321 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 12262
Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACT 281981
| ||| || || ||||| ||| | | |||||| |||||| | || |||
Sbjct 12261 GCAAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAACATGTGAACAAAACT 12202
Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATA 282040
|| ||||| |||||| || |||||||| | || |||||||| || || | |||
Sbjct 12201 TTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCATG 12142
Query 282041 CCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073
|| ||||||||| | || ||||| |||||
Sbjct 12141 TTGC-TGAACAAAATCAACTCTTTGTCGATGAA 12110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057746041015760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |