Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq118 120 4e-22
seq72 82.4 9e-11
>seq118
Length=130256
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| ||||
Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012
|| | ||||| ||||| | |||||||||||
Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352
Score = 120 bits (132), Expect = 4e-22
Identities = 159/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001
|| ||| ||||||||| || ||||| | || |||||||||||||||||| || |||
Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694
Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753
Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120
|| ||| | ||||| || || | ||| ||| ||||| |||||||| || ||
Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813
Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158
|| | | || || | ||||| |||||||| ||||
Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763
||||| ||||| |||||||| | || ||||||| | | ||||||| | |||
Sbjct 96740 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 96799
Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 96800 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 96859
Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883
| | ||||| |||||||||| |||||| ||||| | ||||| || | || | ||
Sbjct 96860 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 96919
Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912
|||||||| || ||||| || || | |||
Sbjct 96920 TCCAATTCGACAGTTGTCACACCTTGATA 96948
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680
Query 53269 ACTATTTCTAAGACCGTA 53286
|||||| ||||| ||
Sbjct 94681 CGAATTTCTCAGACCATA 94698
Score = 100 bits (110), Expect = 3e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899
Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959
Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532
| |||| | | |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016
Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073
Query 53593 AATAGGAT 53600
|| |||||
Sbjct 95074 AAAAGGAT 95081
>seq72
Length=199954
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890
||| |||||| ||| |||||||| || || |||||||||||||| || |||||||||||
Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135
Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923
| ||| || |||||| || ||| | |||||
Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593678911416960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |