Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq118 120 4e-22 seq72 82.4 9e-11 >seq118 Length=130256 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352 Score = 120 bits (132), Expect = 4e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 || ||| ||||||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 || | | || || | ||||| |||||||| |||| Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||||| ||||| |||||||| | || ||||||| | | ||||||| | ||| Sbjct 96740 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 96799 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 96800 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 96859 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | | ||||| |||||||||| |||||| ||||| | ||||| || | || | || Sbjct 96860 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 96919 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912 |||||||| || ||||| || || | ||| Sbjct 96920 TCCAATTCGACAGTTGTCACACCTTGATA 96948 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680 Query 53269 ACTATTTCTAAGACCGTA 53286 |||||| ||||| || Sbjct 94681 CGAATTTCTCAGACCATA 94698 Score = 100 bits (110), Expect = 3e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959 Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532 | |||| | | |||| || | ||||| ||||| | | |||||| || || || Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016 Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073 Query 53593 AATAGGAT 53600 || ||||| Sbjct 95074 AAAAGGAT 95081 >seq72 Length=199954 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 | ||| || |||||| || ||| | ||||| Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678911416960