Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq72 183 3e-41 >seq72 Length=199954 Score = 183 bits (202), Expect = 3e-41 Identities = 266/373 (71%), Gaps = 7/373 (2%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | || || | || || ||||||| || | ||||| ||||| || Sbjct 23334 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 23393 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919 || ||||| || || || || || |||||||| | |||| |||||||| ||| | Sbjct 23394 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 23450 Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAA 116979 || | ||| |||| | |||| ||||| |||||||| || |||||||| || Sbjct 23451 CCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGAA 23510 Query 116980 AGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCG 117039 | || || || ||||| |||||||||||| | | | || | | || |||| || Sbjct 23511 GAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACG 23570 Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099 |||| || ||||| || || || ||| | |||||||| ||||| ||||| | || || Sbjct 23571 TTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTT 23630 Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159 ||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| | Sbjct 23631 CTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCG 23690 Query 117160 GGACGAGGGTCTG 117172 ||||| |||||| Sbjct 23691 TGACGA-GGTCTG 23702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515182155739520