Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq72 183 3e-41
>seq72
Length=199954
Score = 183 bits (202), Expect = 3e-41
Identities = 266/373 (71%), Gaps = 7/373 (2%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | || || | || || ||||||| || | ||||| ||||| ||
Sbjct 23334 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 23393
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919
|| ||||| || || || || || |||||||| | |||| |||||||| ||| |
Sbjct 23394 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 23450
Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAA 116979
|| | ||| |||| | |||| ||||| |||||||| || |||||||| ||
Sbjct 23451 CCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGAA 23510
Query 116980 AGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCG 117039
| || || || ||||| |||||||||||| | | | || | | || |||| ||
Sbjct 23511 GAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACG 23570
Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099
|||| || ||||| || || || ||| | |||||||| ||||| ||||| | || ||
Sbjct 23571 TTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTT 23630
Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159
||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| |
Sbjct 23631 CTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCG 23690
Query 117160 GGACGAGGGTCTG 117172
||||| ||||||
Sbjct 23691 TGACGA-GGTCTG 23702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515182155739520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |