Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq241 84.2 2e-11 >seq241 Length=39592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| || ||||| | || | |||||| ||||| || || || ||||| || ||| ||| Sbjct 18420 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 18479 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || | ||| | || || | || | || || || | ||| | |||||||| Sbjct 18480 TTTTCCTTTCACATTTTCTATTGTATCAGATGGT-TCTACTTCTAAGGTGATCGTTTTGC 18538 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || |||||||| ||||| Sbjct 18539 CGGTAAGAGTCTTAACAAAAATTTGCAT 18566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799987404384