Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21 111 2e-19 seq131 105 8e-18 seq69 105 8e-18 seq14 105 8e-18 >seq21 Length=411193 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| || Sbjct 95860 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 95801 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 95800 ACTCACCACTATACTACCGAGGAT 95777 >seq131 Length=122001 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49241 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49182 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 49181 TACTACCGAGGAT 49169 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49938 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49879 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 49878 TACTACCGAGGAT 49866 >seq69 Length=204402 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||| | ||| || ||| |||| |||| ||||||||||||| |||| |||||||||| Sbjct 58316 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 58257 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||||||||||||||||||||||| Sbjct 58256 AGGCGGGAATACTCACCACTATACTACCGAGGA 58224 >seq14 Length=463735 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 75301 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 75242 Query 60126 TACTACCGAGGATTGA 60141 |||||||||||| ||| Sbjct 75241 TACTACCGAGGACTGA 75226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571776486314560