Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq72 143 2e-29
seq241 95.1 1e-14
seq315 87.8 2e-12
seq4683 86.0 6e-12
seq118 86.0 6e-12
>seq72
Length=199954
Score = 143 bits (158), Expect = 2e-29
Identities = 259/371 (70%), Gaps = 12/371 (3%)
Strand=Plus/Plus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| || ||||||| |||||| | ||||| || ||||| | | || || || || ||
Sbjct 23334 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 23393
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856
| | ||||| ||||| || ||||| |||||||| || | ||||| || ||| |
Sbjct 23394 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 23453
Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911
|| | ||| ||| || ||||||||||||||||| || || || ||| |
Sbjct 23454 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 23508
Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970
|| || ||||| ||| | | ||||| | || || | | | || |||
Sbjct 23509 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 23567
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | |||||||||| || || ||||| || |||||||| |||||||| ||| ||||
Sbjct 23568 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 23627
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 23628 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 23687
Query 58091 GCGCGACGAGG 58101
|| |||||||
Sbjct 23688 TCGTGACGAGG 23698
>seq241
Length=39592
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 26879 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26938
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || |||
Sbjct 26939 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 26998
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 26999 CAACGTCTGATTTTTGCTGG 27018
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 19131 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 19072
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| ||||||||| | || || || ||
Sbjct 19071 GATACAATAGAGAATGTGAAAGGCAAAATACAGGATAAGGAAGGCATTCCACCGGATCAA 19012
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 19011 CAACGTTTGATTTTTGCTGGTAA 18989
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 19976 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19917
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 19916 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19857
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 19856 CAACGTTTGATTTTTGCTGGTAA 19834
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 20538 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 20479
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 20478 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 20419
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 20418 CAACGTTTGATTTTTGCTGGTAA 20396
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 19414 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19355
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 19354 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19295
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | || || |||||
Sbjct 19294 CAACGTTTGATTTTTGCTGG 19275
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 18849 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18790
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | ||| || || ||||| | || || || |||
Sbjct 18789 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 18730
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 18729 CAACGTCTGATTTTTGCTGG 18710
>seq315
Length=12309
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 11172 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 11113
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 11112 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11053
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 11052 CAACGTTTGATTTTTGCTGGTAA 11030
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 11734 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 11675
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 11674 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11615
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | || || ||||| ||
Sbjct 11614 CAACGTTTGATTTTTGCTGGTAA 11592
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 12014 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 11955
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| |||||||| | || || || ||
Sbjct 11954 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11895
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT 31341
|| ||| | || || ||||| || |||||
Sbjct 11894 CAACGTTTGATTTTTGCTGGTAAGCAGTT 11866
>seq4683
Length=240
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 142 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 83
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 82 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 23
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | || || |||||
Sbjct 22 CAACGTTTGATTTTTGCTGG 3
>seq118
Length=130256
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| ||
Sbjct 95718 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 95777
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
|| || ||| |||||||||||| || | ||| || || | ||| || |||||
Sbjct 95778 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 95837
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || | || || |||||||| || |||||||
Sbjct 95838 AGGTTCCAAATATACCGCAAACGCCCCAGGTCTCT 95872
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 96097 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 96156
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 96157 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 96191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445734349395840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |