Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq52 96.9 7e-15 >seq52 Length=248017 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||||| ||||||||||| || | || | || ||| Sbjct 76492 TTTTGGAGAGGAGTGGTCGAAGAACTGCTTTGGTTCATCAGTGGAAGCACCAATGCTAAA 76433 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||| ||| | | ||| || ||||||| || ||| Sbjct 76432 CAGCTTTCAGAGAAGAATGTTAACATTTGGGATGGAAATTCTTCCAGGGAATTCTTAGAC 76373 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 |||||||| | ||| || | ||| || |||||||| || || || || ||||||||| Sbjct 76372 AGTAGAGGCCTGTACAATTATGAAGAAGGTGATTTGGGGCCTGTTTATGGTTTCCAATGG 76313 Query 35429 CGTCATTTTGG 35439 || || ||||| Sbjct 76312 CGCCACTTTGG 76302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989511070133160