Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq118 116 5e-21
seq72 87.8 2e-12
>seq118
Length=130256
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250
|| | ||||| ||||| | |||||||||||
Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352
Score = 107 bits (118), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239
|| ||| ||| ||||| || ||||| | || |||||| ||||||||||| || |||
Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694
Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63298
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753
Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358
|| ||| | ||||| | || | ||| ||| ||||| |||||||| || ||
Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813
Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396
|| | | || || | ||||| |||||||| ||||
Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851
Score = 105 bits (116), Expect = 8e-18
Identities = 177/251 (71%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650
|||||| |||||||| ||||| || || ||| ||| || || ||||| || ||
Sbjct 94837 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 94896
Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710
| || | | ||||| ||||| ||| | ||||| ||||||||||| || |||||
Sbjct 94897 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 94956
Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767
||| | |||| | | |||| || | ||||| ||||| | | |||||| || ||
Sbjct 94957 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATC 95013
Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827
||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || |
Sbjct 95014 CGCCAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 95072
Query 62828 TGGAATAGGAT 62838
||| |||||
Sbjct 95073 --GAAAAGGAT 95081
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
|||||| |||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680
Query 62507 ACTATTTCTAAGACCGTA 62524
|||||| ||||| ||
Sbjct 94681 CGAATTTCTCAGACCATA 94698
>seq72
Length=199954
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337
||| |||||| ||| |||||||| || || |||||||||||||| || ||||| |||||
Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135
Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370
|| ||| || |||||| || || ||||||||
Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629772316114560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |