Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq118 93.3 4e-14
>seq118
Length=130256
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| | ||||| || ||||||| ||| ||||| ||||||
Sbjct 94142 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 94201
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| |||| ||||| |||||||| |||| ||| || || | || |
Sbjct 94202 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 94261
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
|||| | || ||| || || ||| || || || || || || || || |||||
Sbjct 94262 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 94321
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|||| | |||||||| || || ||||||||||| || ||
Sbjct 94322 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 94362
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || ||||
Sbjct 96117 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 96176
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || |||| | | ||||||||| || || ||| ||
Sbjct 96177 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 96235
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || || || || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 96236 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 96295
Query 38471 TATATGT 38477
|||| ||
Sbjct 96296 TATAAGT 96302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468491113066880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |