Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq118 125 9e-24 seq72 87.8 2e-12 >seq118 Length=130256 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||||| ||||| |||||||| | || ||||||| | | | ||||||| || ||| Sbjct 96740 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 96799 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 96800 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 96859 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 96860 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 96919 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943 |||||||| || ||||| || || | ||| Sbjct 96920 TCCAATTCGACAGTTGTCACACCTTGATA 96948 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| ||||| | ||||||||||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352 Score = 116 bits (128), Expect = 5e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 || ||| ||| ||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || ||| ||||||| || || | ||| ||| ||||| |||||||| || || Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 || | | || || ||||| |||||||| |||| Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680 Query 65300 ACTATTTCTAAGACCGTA 65317 |||||| ||||| || Sbjct 94681 CGAATTTCTCAGACCATA 94698 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959 Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563 | |||| | | |||| || | ||||| ||||| | | |||||| || || || Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016 Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073 Query 65624 AATAGGAT 65631 || ||||| Sbjct 95074 AAAAGGAT 95081 >seq72 Length=199954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 | ||| || |||||| || ||||| ||||| Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658125477375680