Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq118 140 5e-28 seq72 87.8 3e-12 >seq118 Length=130256 Score = 140 bits (154), Expect = 5e-28 Identities = 209/294 (71%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| | || ||||||||| | |||||||| |||||||| Sbjct 94793 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 94852 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || ||| Sbjct 94853 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAA 94912 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA--GATCTTGTG 79396 || ||||| || | ||||| |||||||| ||||| |||||||| | |||| | Sbjct 94913 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCT--AG 94970 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 ||||| | ||||| ||||| | | |||||| || || || |||||||| |||| Sbjct 94971 CTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 95030 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 ||||||| || |||| ||| | || ||||| |||| || | ||| ||||| Sbjct 95031 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---GAAAAGGAT 95081 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| |||||||||||||| || | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| ||||| | ||||||||||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352 Score = 107 bits (118), Expect = 3e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 |||||| ||| ||||| || ||||| | ||| | |||||||||||||| | ||| ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 |||| ||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 95754 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 95755 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 95814 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 || | | || || | ||||| |||||||| |||| Sbjct 95815 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || || ||||| || ||||| || |||| ||| || Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680 Query 79179 ACTATTTCTAAGACCGTA 79196 |||||| ||||| || Sbjct 94681 CGAATTTCTCAGACCATA 94698 >seq72 Length=199954 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 || ||| || |||||| || || |||||||| Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718217156473280