Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq72 82.4 7e-11 >seq72 Length=199954 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| ||| || ||||| | || | |||||| |||||||| |||||||||||| Sbjct 24193 ATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCC 24134 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTT 13449 ||||| || ||||||||| ||||| |||||| Sbjct 24133 AGTGAAATCAATTCCATAAAGTCGAACGGATTT 24101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478554389465280