Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3982 91.5 1e-13 seq36 91.5 1e-13 seq315 82.4 5e-11 >seq3982 Length=267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||||||||| |||||||| || | || | ||||| |||||| |||||| | Sbjct 140 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 81 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||||| ||||| || || | || |||||||| || ||||| Sbjct 80 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 21 Query 44102 GTCTTCACAAATATTTGCAT 44121 || |||||||| || ||||| Sbjct 20 GTTTTCACAAAAATCTGCAT 1 >seq36 Length=323583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||||||||| |||||||| || | || | ||||| |||||| |||||| | Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||| | |||||| || || | || |||||||| || ||||| Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41375 Query 44102 GTCTTCACAAATATTTGCAT 44121 || |||||||| || ||||| Sbjct 41376 GTTTTCACAAAAATCTGCAT 41395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||||||||| |||||||| || | || | ||||| |||||| |||||| | Sbjct 41542 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41601 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||||| ||||| || || | || |||||||| || ||||| Sbjct 41602 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41661 Query 44102 GTCTTCACAAATATTTGCAT 44121 || |||||||| || ||||| Sbjct 41662 GTTTTCACAAAAATCTGCAT 41681 >seq315 Length=12309 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||| || || ||||||||||| || || || ||| | || | || ||||||||| Sbjct 7140 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7199 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| ||| || | | | ||||| | || || || || | || |||||||| Sbjct 7200 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7259 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| |||||||| Sbjct 7260 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 7289 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||| || || ||||||||||| || || || ||| | || | || ||||||||| Sbjct 7706 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7765 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| ||| || | | | ||||| | || || || || | || |||||||| Sbjct 7766 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7825 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| |||||||| Sbjct 7826 TCCAGTAAGAGTCTTAACAAAAATTTGCAT 7855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354752729203296