Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq36 127 5e-24 seq241 122 2e-22 seq315 118 2e-21 seq4683 96.9 8e-15 >seq36 Length=323583 Score = 127 bits (140), Expect = 5e-24 Identities = 118/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||||| |||| || || ||||||||||| || ||||| ||||||||||| Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT- 42021 Query 104474 TTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 ||| ||||| |||||||| | ||| || ||||| || |||||||| ||||| || || Sbjct 42022 TTTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCC 42081 Query 104533 AGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || ||||||||||| Sbjct 42082 AGTAAGTGTCTTCACGAATATCTGCAT 42108 Score = 120 bits (132), Expect = 7e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || ||||| || || || ||||| || || ||||| Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 17847 GTTTTCACAAATATCTGCAT 17828 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | || |||||||| || || ||||| ||||| ||||| || | Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || ||||| || | ||| || || || ||||| | | Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41375 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| ||||| ||||||||| Sbjct 41376 GTTTTCACAAAAATCTGCATT 41396 >seq241 Length=39592 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || ||||| || || || ||||| || || ||||| Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||||||||| Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTTG 21788 Score = 120 bits (132), Expect = 7e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || ||||| || || || ||||| || || ||||| Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 21433 GTTTTCACAAATATCTGCAT 21452 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 22715 GTTTTCACAAATATCTGCAT 22734 Score = 116 bits (128), Expect = 9e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | ||||||||| || || ||||| |||||||| ||||| Sbjct 18421 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 18480 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||| |||| |||||||||| ||||| |||||||| |||| || || || || || Sbjct 18481 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCG 18540 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || ||||| || |||||| Sbjct 18541 GTAAGAGTCTTAACAAAAATTTGCATT 18567 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 19549 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 19608 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||| |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 19609 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19668 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || |||||| Sbjct 19669 GTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||||||||| ||||| ||||| || ||||| |||||||| || Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || || ||||| ||||| || || | || || || || ||||| || Sbjct 17642 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17701 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 17702 GTCTTAACAAAAATTTGCATT 17722 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || |||||||||||||| ||||| || || Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | || || || || || ||||| Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17984 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 17985 GTCTTAACAAAAATTTGCATT 18005 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || ||||| |||||||| ||||| ||| || Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||||| ||||| |||||||| || | || || || || |||||||| Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 20236 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 20237 GTCTTAACGAAAATTTGCATT 20257 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || |||||||||||||| ||||| || || Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | || || || || || ||||| Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || |||||||| |||||||| || || || Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| |||| || || || || || ||||| Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 26898 GTCTTAACGAAAATTTGCATT 26878 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || || ||||| |||||||| || || Sbjct 18989 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 19048 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| ||||| |||| ||||| |||||||| |||| || || || || || ||| Sbjct 19049 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 19108 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || |||||| Sbjct 19109 AGAGTCTTAACAAAAATTTGCATT 19132 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || |||||||| |||||||| || || Sbjct 19834 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 19893 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||| |||| ||||| |||||||| || | || || || || || ||| Sbjct 19894 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 19953 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 19954 AGAGTCTTAACGAAAATTTGCATT 19977 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || |||||||| |||||||| || || Sbjct 20396 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 20455 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||| |||| ||||| |||||||| || | || || || || || ||| Sbjct 20456 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 20515 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 20516 AGAGTCTTAACGAAAATTTGCATT 20539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || |||||||| |||||||| || Sbjct 20673 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 20732 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||| |||||||| | ||||| |||||||| || | || || || || ||| Sbjct 20733 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 20792 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || |||||| Sbjct 20793 GTAAGGGTCTTAACGAAAATTTGCATT 20819 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || |||||||| |||||||| || || || Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | || || || || || ||||| Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19394 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 19395 GTCTTAACGAAAATTTGCATT 19415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || || ||||| |||||||| || || Sbjct 18144 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 18203 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG-TCTTACCAGT 104535 |||| ||||| |||| ||||| |||||||| |||| || || | | || || || Sbjct 18204 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTTGCCGGT 18263 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 ||| || || ||||| || |||||| Sbjct 18264 AAGAGTCTTAACAAAAATTTGCATT 18288 >seq315 Length=12309 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || ||||| || || || ||||| || || ||||| Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 104537 AGTGTTTTTACAAATATCTGCATTT 104561 || ||||| |||||||||||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 11307 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 11366 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||| |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 11367 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 11426 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || |||||| Sbjct 11427 GTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 12149 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 12208 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||| |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 12209 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 12268 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || |||||| Sbjct 12269 GTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||| |||||||| ||||| || || Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| |||| || || || || || ||||| Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 7554 GTCTTAACGAAAATTTGCATT 7574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || |||||||| |||||||| || || Sbjct 11030 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11089 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||| |||| ||||| |||||||| || | || || || || || ||| Sbjct 11090 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11149 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 11150 AGAGTCTTAACGAAAATTTGCATT 11173 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || |||||||| |||||||| || || Sbjct 11592 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11651 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||| |||| ||||| |||||||| || | || || || || || ||| Sbjct 11652 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11711 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 11712 AGAGTCTTAACGAAAATTTGCATT 11735 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGC- 6927 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||| |||| ||||| |||||||| |||| || || || || || ||||| Sbjct 6928 CTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 6988 GTCTTAACGAAAATTTGCATT 7008 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || |||||||| |||||||| || Sbjct 11869 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 11928 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||| |||||||| | ||||| ||||| || || | ||| || || || || Sbjct 11929 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCG 11988 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || |||||| Sbjct 11989 GTGAGGGTCTTAACAAAAATTTGCATT 12015 >seq4683 Length=240 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || |||||||| |||||||| || || || Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | || || || || || ||||| Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 122 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 123 GTCTTAACGAAAATTTGCATT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313544816416