Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 >seq7 Length=540297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| ||| || | |||||| | ||| || | | | ||||| Sbjct 87747 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 87803 Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 | | | || || || || || || ||||| || || ||||| || || ||| | Sbjct 87804 GATAATATTTGGCAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 87862 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | ||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 87863 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 87922 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || | Sbjct 87923 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 87982 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | ||| || ||||| || | |||| Sbjct 87983 GTGCAATGCGACCATAGCAGCCGACAGGAA 88012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430024252111424