Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq36 95.1 1e-14
>seq36
Length=323583
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920
||| || || |||||||||||||||||||||| |||||||| ||||| || || | |||
Sbjct 41962 CTGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT 42021
Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980
||| || || ||| ||||| | | || || || | || || ||||||||
Sbjct 42022 TTTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCC 42081
Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || ||||| || ||||||||
Sbjct 42082 AGTAAGTGTCTTCACGAATATCTGCAT 42108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448258967862720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |