Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq22 199 6e-47
seq1 150 3e-32
seq147 149 1e-31
seq208 141 1e-29
>seq22
Length=385813
Score = 199 bits (220), Expect = 6e-47
Identities = 208/273 (76%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || ||
Sbjct 285537 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 285596
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| ||||||||||| || |||||| || || ||| | |||||||| |
Sbjct 285597 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 285656
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| |||
Sbjct 285657 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 285716
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | || ||||| || |||||||| | || ||||| |||||| | |||||
Sbjct 285717 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 285776
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704
||| | |||||||| || || |||||| |||
Sbjct 285777 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 285809
>seq1
Length=1490669
Score = 150 bits (166), Expect = 3e-32
Identities = 198/272 (73%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||||| | | || |||||||| ||||||||||| || || || ||
Sbjct 1370244 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 1370185
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||| |||||||| || ||||| || || ||| |||||||||| | |
Sbjct 1370184 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 1370125
Query 16553 CGTGATGTTTTGAAGATCTTC-CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| ||||| || | | ||| | | |||||| || ||| ||
Sbjct 1370124 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 1370066
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || ||| | || || || ||| | |||||| | ||||||||||||||| | |||||
Sbjct 1370065 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 1370006
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| | |||||||||||||| |||||| ||
Sbjct 1370005 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 1369974
>seq147
Length=107944
Score = 149 bits (164), Expect = 1e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| | | | | | || ||||| || |||||||| || || ||||| ||
Sbjct 20151 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 20092
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||||||||||| || |||||| | || || || | ||||||||||
Sbjct 20091 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 20032
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||| || | | | |||| | | |||||| | ||| |||
Sbjct 20031 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 19972
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||||||||| || | |||||| | || ||||| | ||||||||||||
Sbjct 19971 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 19912
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||| || || ||
Sbjct 19911 CGAACTATTTACGGCTTCGG 19892
>seq208
Length=64564
Score = 141 bits (156), Expect = 1e-29
Identities = 196/273 (72%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | | || |||||||| || |||||||| || || || ||
Sbjct 30728 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 30669
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 30668 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 30609
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| |||||| ||| ||| | | |||||| || ||| |||
Sbjct 30608 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 30549
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| ||||| | |||||| | || ||||| |||||| | |||||
Sbjct 30548 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 30489
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704
|| | || ||||||||||| ||||| |||||
Sbjct 30488 CGAACCATCTATGGTTTTGGTGGTTAACTCTTC 30456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069940906136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |