Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq22 199 6e-47 seq1 150 3e-32 seq147 149 1e-31 seq208 141 1e-29 >seq22 Length=385813 Score = 199 bits (220), Expect = 6e-47 Identities = 208/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 285537 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 285596 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 285597 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 285656 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 285657 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 285716 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| || |||||||| | || ||||| |||||| | ||||| Sbjct 285717 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 285776 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 285777 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 285809 >seq1 Length=1490669 Score = 150 bits (166), Expect = 3e-32 Identities = 198/272 (73%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || || || || Sbjct 1370244 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 1370185 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| |||||||||| | | Sbjct 1370184 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 1370125 Query 16553 CGTGATGTTTTGAAGATCTTC-CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||| || | | ||| | | |||||| || ||| || Sbjct 1370124 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 1370066 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | || || || ||| | |||||| | ||||||||||||||| | ||||| Sbjct 1370065 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 1370006 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||||||||||||| |||||| || Sbjct 1370005 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 1369974 >seq147 Length=107944 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | | | | || ||||| || |||||||| || || ||||| || Sbjct 20151 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 20092 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||||||| || |||||| | || || || | |||||||||| Sbjct 20091 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 20032 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| ||| Sbjct 20031 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 19972 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||||||||| || | |||||| | || ||||| | |||||||||||| Sbjct 19971 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 19912 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 19911 CGAACTATTTACGGCTTCGG 19892 >seq208 Length=64564 Score = 141 bits (156), Expect = 1e-29 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| || |||||||| || || || || Sbjct 30728 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 30669 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 30668 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 30609 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| ||| ||| | | |||||| || ||| ||| Sbjct 30608 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 30549 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| ||||| | |||||| | || ||||| |||||| | ||||| Sbjct 30548 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 30489 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704 || | || ||||||||||| ||||| ||||| Sbjct 30488 CGAACCATCTATGGTTTTGGTGGTTAACTCTTC 30456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069940906136