Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq118 116 5e-21 seq72 87.8 2e-12 >seq118 Length=130256 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 62199 || | ||||| ||||| | ||||||||||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352 Score = 116 bits (128), Expect = 5e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 || ||| ||| ||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 || | | || || | ||||| |||||||| |||| Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Score = 104 bits (114), Expect = 3e-17 Identities = 175/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959 Query 62663 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62719 | |||| | | |||| || | ||||| ||||| | | |||||| || ||||| Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016 Query 62720 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62779 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073 Query 62780 AATAGGAT 62787 || ||||| Sbjct 95074 AAAAGGAT 95081 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680 Query 62456 ACTATTTCTAAGACCGTA 62473 |||||| ||||| || Sbjct 94681 CGAATTTCTCAGACCATA 94698 >seq72 Length=199954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 || ||| || |||||| || || |||||||| Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902410096320