Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq118 91.5 1e-13
>seq118
Length=130256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172
||||||||||||||| | | |||| || |||||||||||||||||||| || |||||
Sbjct 94144 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 94203
Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229
| |||||| | ||| ||| || || |||| || ||| ||| | || |
Sbjct 94204 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 94260
Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289
||| | || ||| | ||| ||| || || ||| | | ||||| || ||||||||
Sbjct 94261 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCAT 94320
Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329
||| | || |||||| |||||||||| | ||||||
Sbjct 94321 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 94360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478627984173440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |