Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq52 132 1e-25 seq118 84.2 6e-11 >seq52 Length=248017 Score = 132 bits (146), Expect = 1e-25 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||||||||| || |||||||| || | ||||| ||| | ||||||||||| || || Sbjct 76520 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAACTGCTTTG 76461 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||| || | ||||| || ||||| || | ||| ||| || ||||| || |||||||| Sbjct 76460 GTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTTAACATTTGGGA 76401 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGT-CGACAACGAAGAAGGT 111491 ||||||| || | || || |||| |||| | | | ||| | | | ||||||||| Sbjct 76400 TGGAAATTCTTCCAGGGAATTCTTAGA--CAGTAGAGGCCTGTACAATTATGAAGAAGGT 76343 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 ||| | || || ||||| || || ||||||||||||||||| Sbjct 76342 GATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 76302 >seq118 Length=130256 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 95864 GGGGCGTTTGCGGTATATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 95806 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| || || ||| || || || ||| |||| ||||| || ||| | Sbjct 95805 GAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGAT 95746 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 95745 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 95686 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 |||||||| || | | ||| | ||||| || || | || ||||||||||||| Sbjct 95685 TGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 95626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257546098064