Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq267 127 1e-24
seq367 122 6e-23
seq215 116 2e-21
seq308 104 2e-17
seq241 91.5 1e-13
seq36 91.5 1e-13
seq315 82.4 5e-11
>seq267
Length=25007
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 12853 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 12912
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 12913 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 12947
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 2113 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 2172
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 2173 TGATCCATTCATACGCGTCACTAATTAGATGACGA 2207
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 9897 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 9956
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 9957 TGATCCATTCATACGCGTCACTAATTAGATGACGA 9991
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 15831 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 15890
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 15891 ACGAATATTTAGTCTT 15906
>seq367
Length=5976
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 5447 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 5388
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 5387 TGATCCATTCATACGCGTCACTAATTAGATGACGA 5353
>seq215
Length=52700
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 48227 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 48286
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| ||||| |||||||||||||||||||||
Sbjct 48287 TGATCCATTCATACGCGTCACTAATTAGATGACG 48320
>seq308
Length=13605
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1583 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 1642
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 1643 GCCGGTATTTAGCCTTA 1659
>seq241
Length=39592
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 21454 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 21513
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 21514 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 21548
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 22736 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 22795
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 22796 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 22830
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| |||||||| ||||||||||| ||
Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | || | |||||||||||| ||| ||
Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 21433 GTTTTCACAAATATCTGCAT 21452
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | || | |||||||||||| ||| ||
Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 22715 GTTTTCACAAATATCTGCAT 22734
>seq36
Length=323583
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||
Sbjct 17826 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 17767
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 17766 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 17732
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| |||||||| ||||||||||| ||
Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | || | |||||||||||| ||| ||
Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 17847 GTTTTCACAAATATCTGCAT 17828
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231
|| || || ||||| |||| | ||| ||||| | || | |||||| || ||| ||||
Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATT 42022
Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291
|| || ||||| | || || ||| ||||||||||| ||| |||||||| ||
Sbjct 42023 TTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCA 42082
Query 38292 GTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || |||||||||||||||||
Sbjct 42083 GTAAGTGTCTTCACGAATATCTGCAT 42108
>seq315
Length=12309
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| ||| ||||| | ||||| ||||| || |||
Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| ||||| || |||||||||||
Sbjct 9204 AGAGTTTTGACAAATATCTGCAT 9226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923719363912
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