Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq118 120 4e-22 seq72 87.8 2e-12 >seq118 Length=130256 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 ||||| || || ||||||| | || ||||||| | | | ||||||| || ||| Sbjct 96740 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 96799 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 96800 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 96859 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 96860 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 96919 Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954 |||||||| || ||||| ||||| | ||| Sbjct 96920 TCCAATTCGACAGTTGTCACACCTTGATA 96948 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 || | ||| | ||||| | ||||||||||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 || ||| ||| ||||| || ||||| | || ||| |||||||||||||| || ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 || | | || || | ||||| |||||||| |||| Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680 Query 62311 ACTATTTCTAAGACCGTA 62328 |||||| ||||| || Sbjct 94681 CGAATTTCTCAGACCATA 94698 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959 Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 | |||| || |||| || | ||||| ||||| | | |||||| || || || Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073 Query 62635 AATAGGAT 62642 || ||||| Sbjct 95074 AAAAGGAT 95081 >seq72 Length=199954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | ||| || |||||| || ||||| ||||| Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586441859200