Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq118 120 4e-22
seq72 87.8 2e-12
>seq118
Length=130256
Score = 120 bits (132), Expect = 4e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805
||||| || || ||||||| | || ||||||| | | | ||||||| || |||
Sbjct 96740 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 96799
Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 96800 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 96859
Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925
| | ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 96860 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 96919
Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954
|||||||| || ||||| ||||| | |||
Sbjct 96920 TCCAATTCGACAGTTGTCACACCTTGATA 96948
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258
Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318
Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054
|| | ||| | ||||| | |||||||||||
Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 94352
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043
|| ||| ||| ||||| || ||||| | || ||| |||||||||||||| || |||
Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694
Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 95695 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 95753
Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162
|| ||| | ||||| || || | ||| ||| ||||| |||||||| || ||
Sbjct 95754 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 95813
Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200
|| | | || || | ||||| |||||||| ||||
Sbjct 95814 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620
Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680
Query 62311 ACTATTTCTAAGACCGTA 62328
|||||| ||||| ||
Sbjct 94681 CGAATTTCTCAGACCATA 94698
Score = 100 bits (110), Expect = 4e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 94840 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 94899
Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 94900 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 94959
Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574
| |||| || |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 94960 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 95016
Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 95017 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 95073
Query 62635 AATAGGAT 62642
|| |||||
Sbjct 95074 AAAAGGAT 95081
>seq72
Length=199954
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
||| |||||| ||| |||||||| || || |||||||||||||| || |||||||||||
Sbjct 24194 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24135
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449
| ||| || |||||| || ||||| |||||
Sbjct 24134 CAGTGAAATCAATTCCATAAAGTCGAACGGATT 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633586441859200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |