Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq241 87.8 2e-12 seq36 87.8 2e-12 seq130 84.2 2e-11 >seq241 Length=39592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 21452 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 21393 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| |||||||| || Sbjct 21392 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCAGA 21337 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| | |||||||| || Sbjct 21336 TCAACAGCGGCTGATTTTTGCTGG 21313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 22734 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 22675 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| |||||||| || Sbjct 22674 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCAGA 22619 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| | |||||||| || Sbjct 22618 TCAACAGCGGCTGATTTTTGCTGG 22595 >seq36 Length=323583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 17828 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 17887 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| |||||||| || Sbjct 17888 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCAGA 17943 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| | |||||||| || Sbjct 17944 TCAACAGCGGCTGATTTTTGCTGG 17967 >seq130 Length=122102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 71036 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 71095 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 71096 TACTTTGTCCGATTACAATATTCAGAAAG 71124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297622623880