Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq241 120 3e-22 seq315 109 5e-19 seq36 105 6e-18 seq4683 100 2e-16 seq3982 95.1 1e-14 seq118 84.2 2e-11 >seq241 Length=39592 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 18566 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 18507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 18506 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 18447 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 || ||| | || ||||| || || ||||| Sbjct 18446 CAGCGTTTGATTTTTGCTGGTAAGCAGTT 18418 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| |||| || ||||| | ||||| ||||||||| || Sbjct 21787 AAAATGCAGATATTTGTCAAAACTCTAACTGGGAAAACCATTACTCTGGAAGTGGAACCC 21728 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || |||||||| || || ||||| |||||||||||| Sbjct 21727 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 21668 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || || Sbjct 21667 CAACAACGTCTGATTTTTGCTGGTAA 21642 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || |||| || ||||| |||| | ||||||||| | | Sbjct 17721 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 17662 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || || | ||| || |||||||| |||||||| ||||| || |||||| Sbjct 17661 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 17602 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || ||||| || Sbjct 17601 CAGCGTCTGATTTTTGCTGG 17582 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 18004 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17945 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 17944 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17885 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 17884 CAACGTCTGATTTTTGCTGG 17865 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 19694 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19635 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 19634 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 19575 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 19574 CAACGTTTGATTTTTGCTGGTAAGCAGTT 19546 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 19131 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 19072 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 19071 GATACAATAGAGAATGTGAAAGGCAAAATACAGGATAAGGAAGGCATTCCACCGGATCAA 19012 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 19011 CAACGTTTGATTTTTGCTGGTAA 18989 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || Sbjct 23069 AAAATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 23010 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || |||||||| || || ||||| |||||||||||| Sbjct 23009 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 22950 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || || Sbjct 22949 CAACAACGTCTGATTTTTGCTGGTAA 22924 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 18849 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18790 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 18789 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 18730 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 18729 CAACGTCTGATTTTTGCTGG 18710 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 19414 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19355 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 19354 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19295 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || ||||| || Sbjct 19294 CAACGTTTGATTTTTGCTGG 19275 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 19976 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19917 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 19916 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19857 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 19856 CAACGTTTGATTTTTGCTGGTAA 19834 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 20256 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20197 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 20196 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 20137 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || ||||| || Sbjct 20136 CAACGTTTGATTTTTGCTGG 20117 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 20538 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 20479 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 20478 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 20419 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 20418 CAACGTTTGATTTTTGCTGGTAA 20396 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 26879 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 26939 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 26998 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 26999 CAACGTCTGATTTTTGCTGG 27018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAA-CGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||||| ||| | ||||| |||| || |||| | ||||| ||| | | Sbjct 18287 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAAACGATCACCTTAGAAGTAGAACCATC 18228 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 18227 TGATACAATAGAGAATGTGAAAGGCAAAATACAGGATAAGGAAGGCATTCCACCGGATCA 18168 Query 22338 ACAACGTCTTATATTTGCCGGCAA 22361 ||||||| | || ||||| || || Sbjct 18167 ACAACGTTTGATTTTTGCTGGTAA 18144 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 20818 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 20759 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 20758 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 20699 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 20698 CAACGTTTGATTTTTGCTGGTAAGCAGTT 20670 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || || || |||||| | || |||||||| || | | Sbjct 21453 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 21394 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||||||||| || || |||||||| ||||| Sbjct 21393 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCA 21334 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || || || ||||| || Sbjct 21333 ACAGCGGCTGATTTTTGCTGG 21313 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || || || |||||| | || |||||||| || | | Sbjct 22735 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 22676 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||||||||| || || |||||||| ||||| Sbjct 22675 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCA 22616 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || || || ||||| || Sbjct 22615 ACAGCGGCTGATTTTTGCTGG 22595 >seq315 Length=12309 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | | Sbjct 7289 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 7230 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 7229 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 7170 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | |||||||| || || Sbjct 7169 CAGCGTTTGATATTTGCTGGTAA 7147 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 7573 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 7514 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 7513 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 7454 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 7453 CAACGTCTGATTTTTGCTGG 7434 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | ||| | ||||| ||| | | Sbjct 7855 ATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 7796 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 7795 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 7736 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | |||||||| || || Sbjct 7735 CAGCGTTTGATATTTGCTGGTAA 7713 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 11452 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 11393 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 11392 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 11333 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 11332 CAACGTTTGATTTTTGCTGGTAAGCAGTT 11304 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | ||||| ||||| |||| | ||||||||| | | Sbjct 12014 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACATTGGAAGTGGAACCATCT 11955 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 11954 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11895 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 11894 CAACGTTTGATTTTTGCTGGTAAGCAGTT 11866 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || ||||| | ||| | ||||| ||| | | Sbjct 12294 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 12235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || ||||| |||||||| |||||| Sbjct 12234 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 12175 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTT 22367 |||||| | || ||||| || || ||||| Sbjct 12174 CAACGTTTGATTTTTGCTGGTAAGCAGTT 12146 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || | Sbjct 9226 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 9167 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| || || ||||| ||||||||||||||| Sbjct 9166 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 9107 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||||| || ||||| || || Sbjct 9106 CAACGTCTGATTTTTGCTGGTAA 9084 Score = 102 bits (112), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 7007 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 6948 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | | ||||| ||||||| || ||||| |||||||| ||||| Sbjct 6947 GATACAATAGAGAATGTAAGGCAAAA--TTCAAGATAAAGAGGGAATTCCACCAGATCAG 6890 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||||| || ||||| || Sbjct 6889 CAACGTCTGATTTTTGCTGG 6870 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 11172 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 11113 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 11112 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11053 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 11052 CAACGTTTGATTTTTGCTGGTAA 11030 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 11734 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 11675 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 11674 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 11615 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | || ||||| || || Sbjct 11614 CAACGTTTGATTTTTGCTGGTAA 11592 >seq36 Length=323583 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| || Sbjct 17493 AAAATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 17552 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || |||||||| || || ||||| |||||||||||| Sbjct 17553 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 17612 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 ||||||||||| || ||||| || || Sbjct 17613 CAACAACGTCTGATTTTTGCTGGTAA 17638 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 41395 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCGTCT 41336 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 41335 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 41276 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 41275 CAACGATTGATATTTGCTGG 41256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 41681 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 41622 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 41621 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 41562 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 41561 CAACGATTGATATTTGCTGG 41542 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || || || |||||| | || |||||||| || | | Sbjct 17827 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 17886 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||||||||| || || |||||||| ||||| Sbjct 17887 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCA 17946 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || || || ||||| || Sbjct 17947 ACAGCGGCTGATTTTTGCTGG 17967 >seq4683 Length=240 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | ||||| |||||| |||| | ||||| ||| | | Sbjct 142 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 83 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || || ||||| || |||||||| |||||| Sbjct 82 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 23 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || ||||| || Sbjct 22 CAACGTTTGATTTTTGCTGG 3 >seq3982 Length=267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | | Sbjct 1 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 60 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| ||||| || |||||||| ||||| Sbjct 61 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 120 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | |||||||| || Sbjct 121 CAACGATTGATATTTGCTGG 140 >seq118 Length=130256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 129977 ATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAAT 130036 ||||| | || ||||||| ||| ||| || ||||| | || ||||| || | || Sbjct 95681 ATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGAT 95740 Query 130037 CGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTAC 130096 | |||| ||| ||||| || ||||||||||| ||| | || ||| | || |||| Sbjct 95741 CAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCT 95800 Query 130097 GTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145 |||| ||||| ||||| | ||||| |||||||| ||||| | ||| Sbjct 95801 TTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 95849 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||||||||| |||| |||||| | ||||||||||||| | |||||||||||| || Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 128839 GTTTTCAAACCGCTTTTCCA 128858 ||||||| ||| | ||||| Sbjct 94199 GTTTTCAGACCCTTCTTCCA 94218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698576017880