Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq13 87.8 4e-12
seq1 87.8 4e-12
>seq13
Length=469219
Score = 87.8 bits (96), Expect = 4e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 387315 GAGAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTC 387256
Query 142560 GAGCCCCACATCGGGC 142575
||||||||| ||||||
Sbjct 387255 GAGCCCCACGTCGGGC 387240
>seq1
Length=1490669
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1296763 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 1296822
Query 142563 CCCCACATCGGGC 142575
|||||| ||||||
Sbjct 1296823 CCCCACGTCGGGC 1296835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027761050997432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |