Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq315 109 1e-18 seq241 109 1e-18 seq36 109 1e-18 seq4683 102 2e-16 seq3982 95.1 2e-14 >seq315 Length=12309 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 11304 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 11363 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 11364 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 11423 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 11424 CCAGTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 12146 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 12205 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 12206 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 12265 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 12266 CCAGTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 11029 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 11087 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 11088 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 11147 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| || |||||| Sbjct 11148 TAAGAGTCTTAACGAAAATTTGCATT 11173 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 11591 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 11649 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 11650 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 11709 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| || |||||| Sbjct 11710 TAAGAGTCTTAACGAAAATTTGCATT 11735 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 11866 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 11925 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || ||| |||||||| ||||||||||| Sbjct 11926 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTG 11985 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| || || || |||||| Sbjct 11986 CCGGTGAGGGTCTTAACAAAAATTTGCATT 12015 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 9083 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 9142 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 9143 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 9202 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||||||| Sbjct 9203 CAGAGTTTTGACAAATATCTGCATT 9227 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | ||||| || |||||||| || || || |||||||| || Sbjct 7146 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 7205 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | | || || || || || || | || |||||||||||| || || |||||||| || Sbjct 7206 TCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGT 7265 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 7266 AAGAGTCTTAACAAAAATTTGCATT 7290 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| | | ||||| || |||||||| || || || |||||||| || Sbjct 7712 CTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 7771 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | | || || || || || || | || |||||||||||| || || |||||||| || Sbjct 7772 TCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGT 7831 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || || || |||||| Sbjct 7832 AAGAGTCTTAACAAAAATTTGCATT 7856 >seq241 Length=39592 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 19546 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 19605 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 19606 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19665 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 19666 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 18768 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 18769 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 18828 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || |||||| Sbjct 18829 AGTCTTAACGAAAATTTGCATT 18850 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 19833 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 19891 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 19892 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 19951 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| || |||||| Sbjct 19952 TAAGAGTCTTAACGAAAATTTGCATT 19977 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 20395 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 20453 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 20454 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 20513 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| ||||| || |||||| Sbjct 20514 TAAGAGTCTTAACGAAAATTTGCATT 20539 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 20670 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 20729 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | || || || || || || | || |||||||||||| || || |||||| Sbjct 20730 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20789 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 20790 CCAGTAAGGGTCTTAACGAAAATTTGCATT 20819 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 21641 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 21700 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 21701 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 21760 Query 68438 GAGGGTCTTGACGAATATCTGCATTATGCTAT 68469 || || ||||| |||||||||||| ||| || Sbjct 21761 TAGAGTTTTGACAAATATCTGCATTTTGCGAT 21792 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG-ACGGCCTCGATGG 68397 |||||| || |||||||| |||||||| || || || |||||||| || ||| || | Sbjct 19292 TTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCCTTTTACATTCTCTATTG 19350 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 | || | || |||||||||||||||||| ||||| || || || ||||| ||||| || | Sbjct 19351 TATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTT 19410 Query 68458 GCATT 68462 ||||| Sbjct 19411 GCATT 19415 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 17923 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 17924 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 17983 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 17984 AGTCTTAACAAAAATTTGCATT 18005 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||| ||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 20108 AACAGCTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 20167 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 20168 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20227 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 20228 CCAGTAAGGGTCTTAACGAAAATTTGCATT 20257 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || ||||||||||||||||| || || || || Sbjct 18988 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTAT-TT 19046 Query 68378 TGCC-TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||| || || ||| || || || | || ||||||||| |||||||| ||||| || | Sbjct 19047 TGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGG 19106 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || || |||||| Sbjct 19107 TAAGAGTCTTAACAAAAATTTGCATT 19132 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || ||||||||||||||||| || || || || Sbjct 18143 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTAT-TT 18201 Query 68378 TGCC-TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT-CCC 68435 |||| || || ||| || || || | || ||||||||| |||||||| |||||| || Sbjct 18202 TGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTTGCCG 18261 Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| || || || |||||| Sbjct 18262 GTAAGAGTCTTAACAAAAATTTGCATT 18288 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 22923 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 22982 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 22983 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 23042 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 23043 CAGAGTTTTCACAAATATCTGCATT 23067 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || || ||||| || ||||| ||||||||||| | Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| | || || | || ||| |||||||| ||||||||||| || || ||| Sbjct 17642 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17701 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 17702 GTCTTAACAAAAATTTGCATT 17722 >seq36 Length=323583 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 ||| || || || || || | |||||| || || || |||||||||||||| || ||||| Sbjct 41962 CTGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT 42021 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 || || || ||||||||||||| || ||| ||||| | || || |||||||| Sbjct 42022 TTTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCC 42081 Query 68435 CGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || || ||||| |||||||||||||| || Sbjct 42082 AGTAAGTGTCTTCACGAATATCTGCATAAT 42111 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 17639 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 17580 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 17579 ACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 17520 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 17519 CAGAGTTTTCACAAATATCTGCATT 17495 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 41542 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41601 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 41602 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41661 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 41662 GTTTTCACAAAAATCTGCAT 41681 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | | ||||||||||| ||||| |||||||| || | Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41375 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 41376 GTTTTCACAAAAATCTGCATT 41396 >seq4683 Length=240 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG-ACGGCCTCGATGG 68397 |||||| || |||||||| |||||||| || || || |||||||| || ||| || | Sbjct 20 TTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCCTTTTACATTCTCTATTG 78 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 | || | || |||||||||||||||||| ||||| || || || ||||| ||||| || | Sbjct 79 TATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTT 138 Query 68458 GCATT 68462 ||||| Sbjct 139 GCATT 143 >seq3982 Length=267 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 140 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 81 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 80 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 21 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 20 GTTTTCACAAAAATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921556135349440