Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq241 87.8 2e-12 seq36 86.0 5e-12 seq315 82.4 6e-11 >seq241 Length=39592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 || |||||||| | || | ||||||||| ||||| ||||| || ||||| || ||| Sbjct 18421 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 18480 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 ||| ||| | | ||| | || || | | ||| || || | ||| | |||||||||| Sbjct 18481 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCG 18540 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || |||||||| ||||| Sbjct 18541 GTAAGAGTCTTAACAAAAATTTGCAT 18566 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| || || ||||||||||||||||| |||||| Sbjct 21311 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 21370 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 21371 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 21430 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 21431 ACGTTTTCACAAATATCTGCAT 21452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| || || ||||||||||||||||| |||||| Sbjct 22593 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 22652 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 22653 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 22712 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 22713 ACGTTTTCACAAATATCTGCAT 22734 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCAT 23066 >seq36 Length=323583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| || || ||||||||||||||||| |||||| Sbjct 17969 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 17910 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 17909 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 17850 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 17849 ACGTTTTCACAAATATCTGCAT 17828 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCAT 17496 >seq315 Length=12309 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCAT 9226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420104947528224