Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq315 102 2e-16
seq241 102 2e-16
seq36 98.7 2e-15
seq116 95.1 3e-14
>seq315
Length=12309
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 9204 AGAGTTTTGACAAATATCTGCATT 9227
>seq241
Length=39592
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| ||
Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761
Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||||||| ||
Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTTG 21788
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 23044 AGAGTTTTCACAAATATCTGCATT 23067
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17984
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 17985 GTCTTAACAAAAATTTGCATT 18005
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || |||||||||||||| |||| || ||||| || ||||| || || |||
Sbjct 17582 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 17638
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| || || | || ||| | ||| ||||| | |||||| || ||||| ||
Sbjct 17639 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 17698
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 17699 AGGGTCTTAACAAAAATTTGCATT 17722
>seq36
Length=323583
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 17518 AGAGTTTTCACAAATATCTGCATT 17495
>seq116
Length=132002
Score = 95.1 bits (104), Expect = 3e-14
Identities = 194/284 (68%), Gaps = 6/284 (2%)
Strand=Plus/Minus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| || || ||| | ||| ||||||||||||||| || || ||| || ||
Sbjct 12390 CCGAATTGACCAATCGGTAGCAATACGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 12331
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||| |||||||| || ||| || |||
Sbjct 12330 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 12271
Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTG 325544
||| |||| | ||| || || ||||| || |||| | |||||||||||| ||
Sbjct 12270 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATG 12213
Query 325545 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTT 325604
| | ||||| ||||| ||| || || |||||||| | ||| |||||||| || |
Sbjct 12212 TGAACAAAACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCT 12153
Query 325605 CCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
| || | | || ||||||||| | || |||||||||||
Sbjct 12152 CGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 12110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179567462419856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |