Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21 102 9e-17 seq131 96.9 4e-15 seq69 96.9 4e-15 seq14 96.9 4e-15 >seq21 Length=411193 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 || |||| |||||| |||| | |||||||||| |||| |||||||||||||||| || Sbjct 95860 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 95801 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||||| Sbjct 95800 ACTCACCACTATACTACCGAGGAT 95777 >seq131 Length=122001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49241 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49182 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 49181 TACTACCGAGGAT 49169 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49938 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49879 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 49878 TACTACCGAGGAT 49866 >seq69 Length=204402 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045 |||| | ||| || ||| |||| |||| | |||||||||| |||| |||||||||| Sbjct 58316 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 58257 Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||| ||||||||||||||||||||||||| Sbjct 58256 AGGCGGGAATACTCACCACTATACTACCGAGGA 58224 >seq14 Length=463735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 75301 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 75242 Query 57067 TACTACCGAGGATTGA 57082 |||||||||||| ||| Sbjct 75241 TACTACCGAGGACTGA 75226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173742999680