Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq21 102 9e-17
seq131 96.9 4e-15
seq69 96.9 4e-15
seq14 96.9 4e-15
>seq21
Length=411193
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 95860 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 95801
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 95800 ACTCACCACTATACTACCGAGGAT 95777
>seq131
Length=122001
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 49241 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49182
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 49181 TACTACCGAGGAT 49169
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 49938 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49879
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 49878 TACTACCGAGGAT 49866
>seq69
Length=204402
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045
|||| | ||| || ||| |||| |||| | |||||||||| |||| ||||||||||
Sbjct 58316 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 58257
Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||| |||||||||||||||||||||||||
Sbjct 58256 AGGCGGGAATACTCACCACTATACTACCGAGGA 58224
>seq14
Length=463735
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 75301 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 75242
Query 57067 TACTACCGAGGATTGA 57082
|||||||||||| |||
Sbjct 75241 TACTACCGAGGACTGA 75226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543173742999680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |