Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq118 116 4e-21 seq315 98.7 1e-15 seq241 96.9 3e-15 seq4683 84.2 2e-11 >seq118 Length=130256 Score = 116 bits (128), Expect = 4e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 94772 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 94831 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 94832 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 94891 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||||||| ||||||||| ||||| || | |||||| |||| Sbjct 94892 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 94951 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| || | | ||||||| Sbjct 94952 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 95011 Query 154404 TCGGCGAGCCCTTG 154417 || || | ||||| Sbjct 95012 TCCGCCAATCCTTG 95025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| | || Sbjct 95631 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 95690 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 95691 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 95750 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | || || |||||||| || || || ||||| |||| || ||| ||| | Sbjct 95751 GAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 95809 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || |||||||| || | ||| || Sbjct 95810 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATACCGCAAACGCCCC 95864 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 ||||| |||||||| | ||||| || ||| || || ||||| |||| ||||||| Sbjct 95383 TATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 95442 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| | Sbjct 95443 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 95502 Query 154746 TCAATAATTG 154755 |||||||||| Sbjct 95503 TCAATAATTG 95512 >seq315 Length=12309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| || Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTT--GC 6927 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 6928 CTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 6988 GTCTTAACGAAAATTTGCATT 7008 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||| ||||| ||||| ||||| Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 7554 GTCTTAACGAAAATTTGCATT 7574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 11029 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 11088 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 11089 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 11148 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 11149 AAGAGTCTTAACGAAAATTTGCATT 11173 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 11591 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 11650 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 11651 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 11710 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 11711 AAGAGTCTTAACGAAAATTTGCATT 11735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | || || || || || |||||||| ||||| ||||| Sbjct 11303 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 11362 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | || ||||| | ||||| || || Sbjct 11363 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 11422 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || ||||||||||||||| Sbjct 11423 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | || || || || || ||||||||||| || || || Sbjct 11865 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 11924 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | |||||||| | || | ||| || Sbjct 11925 TATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTT 11984 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | || || || |||||||||||| Sbjct 11985 GCCGGTGAGGGTCTTAACAAAAATTTGCATT 12015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | || || || || || |||||||| ||||| ||||| Sbjct 12145 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 12204 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | || ||||| | ||||| || || Sbjct 12205 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 12264 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || ||||||||||||||| Sbjct 12265 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 12295 >seq241 Length=39592 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| ||||| ||||| Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||||| || | || |||||||| | | Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 26898 GTCTTAACGAAAATTTGCATT 26878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| ||||| ||||| Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17984 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 17985 GTCTTAACAAAAATTTGCATT 18005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | ||||| || || || |||||||| ||||| ||||| Sbjct 18417 AAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 18476 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | || ||||||| || | || || Sbjct 18477 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 18536 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||| || || |||||||||||| Sbjct 18537 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 18567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 19833 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 19892 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 19893 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 19952 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 19953 AAGAGTCTTAACGAAAATTTGCATT 19977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 20395 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 20454 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 20455 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 20514 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 20515 AAGAGTCTTAACGAAAATTTGCATT 20539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19394 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 19395 GTCTTAACGAAAATTTGCATT 19415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || |||||| || ||| |||| | || || || || || |||||||| ||||| ||||| Sbjct 19545 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 19604 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| || ||| || | ||||||| | || ||||| | ||||| || || Sbjct 19605 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 19664 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | || || ||||||||||||||| Sbjct 19665 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 19695 >seq4683 Length=240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | || || || || || ||||||||||| || || |||||||| Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 122 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 123 GTCTTAACGAAAATTTGCATT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608875538880