Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq15 105 5e-18 >seq15 Length=436742 Score = 105 bits (116), Expect = 5e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 || ||||| ||||| | || | |||||||||||||| || | ||||| ||||| ||| Sbjct 353184 CCATCGCGTCCGGCACGCCCAGTTTCTTGATAATAACCTTCGATCGATTTCGGCATGCTG 353125 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAA 118298 || || || || || |||||||| || || ||||||||||| ||||| || ||||||| | Sbjct 353124 TGGTGAATGACGAAACGCACGTCCGGCTTGTCGATGCCCATGCCGAAAGCGATCGTCGCA 353065 Query 118299 CATATCAC 118306 || || || Sbjct 353064 CAAATGAC 353057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381746036772288