Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq72 86.0 6e-12 >seq72 Length=199954 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 ||| | || ||| ||||| | | |||||||| ||||| || | ||||| || Sbjct 23476 CTGTTCAACGCGATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGC 23535 Query 52365 TGGATCGA-GAGCGACAC-CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCG 52422 ||||||| || || || ||||| || ||| || |||| || ||||| || | Sbjct 23536 TGGATCGGTGACCGTCAGTCGCCATTTTG--CGAACGTTTGGTCGCGTTCGCAGCTGTTG 23593 Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482 | ||| | || |||||||||||||| || | || || | | |||| | ||| | | Sbjct 23594 AAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGA 23653 Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525 ||||||| ||||||||||||||||| |||| || || ||||| Sbjct 23654 TGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGA 23696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226718733440