Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq241 84.2 5e-11 >seq241 Length=39592 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 |||||| || || || || | |||||| || ||||| |||||| ||| || ||||| Sbjct 18420 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 18479 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 ||| ||||| ||| | || || | || |||||| || || |||||||| || || Sbjct 18480 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 18539 Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||||||||| Sbjct 18540 GGTAAGAGTCTTAACAAAAATTTG 18563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178834716425384