Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq72 183 3e-41 >seq72 Length=199954 Score = 183 bits (202), Expect = 3e-41 Identities = 270/377 (72%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| | Sbjct 23701 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 23642 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| ||||| |||||||| | ||| || || || |||| Sbjct 23641 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 23582 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089 | || |||| || |||| || |||| | || || |||||||||||| ||| Sbjct 23581 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 23526 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || || || |||| || |||||||| || || ||||| ||||| |||| | | | | Sbjct 23525 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGA--AAATCAC 23468 Query 133150 TCTTCCGAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTGTA 133204 || | ||| ||| | |||||||||||| |||| | |||||||| || || | Sbjct 23467 GCTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATGGA 23411 Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264 | || || ||||| ||||| ||||| || || | || |||||| || || | ||||| Sbjct 23410 CATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTT 23351 Query 133265 GAGCGAAACGCTCGACC 133281 | | || ||||| ||| Sbjct 23350 GCGAAAATCGCTCCACC 23334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136837575680