Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq35 336 2e-86 seq32 132 4e-25 seq2 105 5e-17 >seq35 Length=333556 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 291594 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 291535 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 291534 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 291475 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 291474 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 291415 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 291414 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 291355 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 291354 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 291295 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 291294 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 291235 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 291234 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 291175 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 ||| | || |||| ||| |||||||| | ||||||||| || || || |||| Sbjct 291174 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 291115 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 291114 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 291055 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 291054 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 290995 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 290994 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 290935 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 290934 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 290894 Score = 109 bits (120), Expect = 4e-18 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 292060 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 292001 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 292000 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 291942 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 291941 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 291882 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 291881 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 291822 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | ||||| |||||| Sbjct 291821 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 291780 >seq32 Length=336299 Score = 132 bits (146), Expect = 4e-25 Identities = 342/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 284428 GGCTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 284487 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| || ||||| || | ||||||| | |||||||| Sbjct 284488 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 284547 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 284548 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTTAACAAAACCATCGCTGAAATTTCTTCG 284607 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 284608 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 284663 Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 284664 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 284723 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555 |||| ||| | | || |||||||| || | ||||| ||||| | | || | | Sbjct 284724 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 284782 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 284783 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 284842 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 284843 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 284902 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 | || ||| ||| || ||| || |||||| Sbjct 284903 CAAC---ACTGAAAATTATTC--AATTCAATA 284929 >seq2 Length=1069731 Score = 105 bits (116), Expect = 5e-17 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 610530 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 610589 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 ||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 610590 GTAACCCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 610649 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 610650 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 610693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780536966812912