Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq35 246 4e-60
seq32 134 2e-26
>seq35
Length=333556
Score = 246 bits (272), Expect = 4e-60
Identities = 547/814 (67%), Gaps = 10/814 (1%)
Strand=Plus/Minus
Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396
||||| ||||| || || ||||| || || || || ||||| | || || || |||
Sbjct 291700 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 291641
Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456
|| || || ||||| | || || |||||||| | ||| || | | |
Sbjct 291640 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 291581
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || ||||||||||| || || || || ||||| | ||||| ||||| || ||
Sbjct 291580 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 291521
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575
|||| ||| | || | || |||||||| ||||||||||| |||||||| || || ||
Sbjct 291520 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 291461
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
||||| || || | || |||| || || || || || || ||||| ||||||||
Sbjct 291460 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 291402
Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
|| || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || |
Sbjct 291401 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 291343
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || ||||||||||| || ||||| || || | || || ||| | || | || || |
Sbjct 291342 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 291283
Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814
||| | ||| || | || ||||| || | ||||| | || ||||| | |
Sbjct 291282 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCTGGTG 291223
Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874
||| |||| || || || | || |||| ||| | ||||| || || ||
Sbjct 291222 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 291166
Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934
||||| || | | ||||| ||||||||| || ||| || ||| |
Sbjct 291165 TGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 291106
Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994
||||| || ||||| |||||||||||||| || | || |||| || ||| || |
Sbjct 291105 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 291046
Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054
| ||||| || || || || ||||| || || || || || || || ||| || |
Sbjct 291045 TTGCCGCATCTCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 290989
Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114
| ||||||||||| ||||| ||||||||||| || | | || | ||||| || |
Sbjct 290988 TACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGCCAACAC 290929
Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
| ||||| || || |||||||| || || ||
Sbjct 290928 AACTGTACGTAGTACCCAAATCAATTCCAATAGC 290895
Score = 116 bits (128), Expect = 5e-21
Identities = 194/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || || ||||| || || |||| || |||||||| || ||||||
Sbjct 292054 GCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 291995
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
|||| |||| | |||| ||| || || || || || || || |||||||| | |
Sbjct 291994 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACAACT 291935
Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216
|||| ||||| | ||| || | || | || ||||| | |||||| || ||||||
Sbjct 291934 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 291878
Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276
| | |||||||||||| | || || || || || || | ||||| | ||
Sbjct 291877 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGTG 291818
Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315
|||||||||| ||| ||||| | |||||||||||||
Sbjct 291817 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 291779
>seq32
Length=336299
Score = 134 bits (148), Expect = 2e-26
Identities = 309/462 (67%), Gaps = 5/462 (1%)
Strand=Plus/Plus
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
|| || || || || |||| | || || |||||||| || | |||||||| || |||
Sbjct 284428 GGCTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 284487
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|| ||||| | |||||| || || || || ||||| ||||| || | | |||| ||
Sbjct 284488 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 284547
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|| | ||| | || || || ||||||||||| | |||||||| |||||| |||||
Sbjct 284548 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTTAACAAAACCATCGCTGAAATTTCTTCG 284607
Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870
| | ||| |||| |||||||||||| | || | || | ||||| ||
Sbjct 284608 GGAGTGAACAATTTCTTTTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCTCGATTTT 284667
Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929
| | ||| | | | ||| ||| ||| |||| | || || ||||| |
Sbjct 284668 TC---AACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 284723
Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989
| || |||| | |||||||||||| || || || || | || || ||| ||
Sbjct 284724 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAACTG 284783
Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049
|| ||||| ||||| ||||| ||||| || | |||||| || || ||||| ||
Sbjct 284784 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 284843
Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091
||| ||||||| || || || || ||||||||||| || ||
Sbjct 284844 GGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACG 284885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635087133951680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |