Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq118 129 7e-25 >seq118 Length=130256 Score = 129 bits (142), Expect = 7e-25 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| | || ||||||||| | |||||||||||||| || || Sbjct 94795 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 94854 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || ||||| | |||| || | || ||||| Sbjct 94855 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAACT 94914 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 94915 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 94974 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||||||||| |||||||| Sbjct 94975 TTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACACCAAT 95034 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||| ||||| Sbjct 95035 ACCAATTGGTCGATGACGTTTGTTAGA 95061 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || ||||||||||||| ||| ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | || || | | |||| |||| ||| |||||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 95754 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| | | || |||||| ||| | ||| |||| |||||| Sbjct 95755 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 95814 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 || || | ||| || || ||||| ||||| ||||||| Sbjct 95815 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATA 95851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562068384377280