Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq35 297 2e-74 seq32 125 6e-23 seq241 122 7e-22 seq315 116 3e-20 seq177 100 2e-15 seq4683 98.7 8e-15 seq36 93.3 3e-13 seq1 93.3 3e-13 seq39 86.0 5e-11 >seq35 Length=333556 Score = 297 bits (328), Expect = 2e-74 Identities = 397/548 (72%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 290895 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 290954 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| |||||||| || | || || ||| ||||||| ||||||| Sbjct 290955 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 291014 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||| ||||| |||||| |||||| | |||||| ||| Sbjct 291015 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 291074 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | | || ||| | Sbjct 291075 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 291134 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 |||||||| |||||||| ||| ||||| | || | |||| |||||| | ||| || Sbjct 291135 GATATGAAACATTGGCCATTCAAAATTATCAACG---ATGGATCGAAACCTAAAATTCAA 291191 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||||||| |||| ||||||| || Sbjct 291192 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 291250 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| |||||| ||||| Sbjct 291251 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 291310 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 291311 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 291370 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 291371 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 291430 Query 550528 ACTTGATA 550535 |||||||| Sbjct 291431 ACTTGATA 291438 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || |||||||| ||||| || || ||||||||||||||||| || ||||||||| Sbjct 292466 GGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAAGTTACTTTTGACATCGATGCC 292525 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 || || |||||||| || |||| Sbjct 292526 AACGGCATTTTGAACGTTTCTGC 292548 >seq32 Length=336299 Score = 125 bits (138), Expect = 6e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||||| | ||||||||| ||| ||| |||| | | Sbjct 284609 CCCGAAGAAATTTCAGCGATGGTTTTGTTAAAAATGAAAGAAATTGCCGAGGCTTATTTG 284550 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | |||| || | || || ||||| ||||| || || |||||||| Sbjct 284549 GGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAACGT 284490 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| ||||||||| |||| || ||||| || Sbjct 284489 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAG 284430 Query 550502 CC 550503 || Sbjct 284429 CC 284428 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 ||||| |||||| |||| ||||| ||| || | | || ||||| ||| ||| ||||| Sbjct 283466 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGG 283407 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | || || | || || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 283406 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 283347 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| | || || |||||| | || || || Sbjct 283346 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 283309 >seq241 Length=39592 Score = 122 bits (134), Expect = 7e-22 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 18828 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 18829 AGTCTTAACGAAAATTTGCAT 18849 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 17983 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 17984 AGTCTTAACAAAAATTTGCAT 18004 Score = 109 bits (120), Expect = 4e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 19549 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 19608 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 19609 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 19667 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 19668 AGTAAGGGTCTTAACGAAAATTTGCAT 19694 Score = 107 bits (118), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || |||||||| |||||||||||||||||| | Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || |||||||||| || ||| ||| | ||| | ||||| |||||||| Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 20235 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 20236 GGTCTTAACGAAAATTTGCAT 20256 Score = 107 bits (118), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 26900 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 26899 AGTCTTAACGAAAATTTGCAT 26879 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 19834 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 19893 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 19894 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 19952 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 19953 AAGAGTCTTAACGAAAATTTGCAT 19976 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 20396 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 20455 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 20456 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 20514 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 20515 AAGAGTCTTAACGAAAATTTGCAT 20538 Score = 100 bits (110), Expect = 2e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||| Sbjct 20673 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 20732 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || ||| || ||||||||||||| || ||| ||| | ||| | ||||| || Sbjct 20733 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 20791 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 20792 AGTAAGGGTCTTAACGAAAATTTGCAT 20818 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 19393 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 19394 AGTCTTAACGAAAATTTGCAT 19414 Score = 96.9 bits (106), Expect = 3e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | || ||||| || |||||||| ||||||||||||||| Sbjct 18421 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 18480 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | || | ||||| || Sbjct 18481 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCC 18539 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| ||||| ||||||||||| Sbjct 18540 GGTAAGAGTCTTAACAAAAATTTGCAT 18566 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | || ||||| ||||||||||| || ||||||||||| || | Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| || | || ||| | || | ||||| ||||| || Sbjct 17642 TTCACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 17700 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 17701 GGTCTTAACAAAAATTTGCAT 17721 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 18989 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 19048 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 19049 CCTTTCACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGT 19107 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 19108 AAGAGTCTTAACAAAAATTTGCAT 19131 >seq315 Length=12309 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||| ||||||||||||||||| | Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 7552 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 7553 AGTCTTAACGAAAATTTGCAT 7573 Score = 109 bits (120), Expect = 4e-18 Identities = 111/141 (79%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||| ||||||||||||| ||||| Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAA--TTTTGC 6927 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 |||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 6928 CTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 6986 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 6987 AGTCTTAACGAAAATTTGCAT 7007 Score = 109 bits (120), Expect = 4e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 11307 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 11366 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 11367 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 11425 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 11426 AGTAAGGGTCTTAACGAAAATTTGCAT 11452 Score = 109 bits (120), Expect = 4e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 12149 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 12208 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 12209 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 12267 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 12268 AGTAAGGGTCTTAACGAAAATTTGCAT 12294 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | || ||||| || |||||||| |||||||||||||||||| Sbjct 7147 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7206 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || || |||||||||| || ||| ||| | ||| | ||||| ||||| Sbjct 7207 CCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 7265 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 7266 AAGAGTCTTAACAAAAATTTGCAT 7289 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | || ||||| || |||||||| |||||||||||||||||| Sbjct 7713 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7772 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || || |||||||||| || ||| ||| | ||| | ||||| ||||| Sbjct 7773 CCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 7831 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 7832 AAGAGTCTTAACAAAAATTTGCAT 7855 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 11030 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11089 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 11090 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 11148 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 11149 AAGAGTCTTAACGAAAATTTGCAT 11172 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 11592 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11651 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 11652 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 11710 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 11711 AAGAGTCTTAACGAAAATTTGCAT 11734 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||| ||||||||||||||||| | Sbjct 8000 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 8059 Query 563395 TTTACTGCCTCAATTGTATCAG 563416 ||||| ||| |||||||||| Sbjct 8060 TTTACATTCTCTATTGTATCAG 8081 >seq177 Length=86949 Score = 100 bits (110), Expect = 2e-15 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || |||||||| |||||||| || || | || |||||||||||||||| Sbjct 6449 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 6508 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | | Sbjct 6509 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 6567 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 6568 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 6611 >seq4683 Length=240 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 121 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 122 AGTCTTAACGAAAATTTGCAT 142 >seq36 Length=323583 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||| Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATT 42022 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTAC 563446 || ||| || || || || || || || || ||| || || | |||||| | Sbjct 42023 TTACTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTC 42080 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||||| || || ||||| || |||||| Sbjct 42081 CAGTAAGTGTCTTCACGAATATCTGCATA 42109 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| | Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||||| | ||| ||| | || | ||||| ||||| | Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 41374 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| ||||| Sbjct 41375 TGTTTTCACAAAAATCTGCAT 41395 >seq1 Length=1490669 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 1437559 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTC 1437618 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 1437619 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 1437678 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 1437679 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 1437738 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| ||||||| Sbjct 1437739 CAAAATTACAAAGAAGTCATTGATCC 1437764 >seq39 Length=312045 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 224614 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 224555 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || | |||| | |||| | ||| Sbjct 224554 AATGGTATAGTTCATGTCAGTGCTCGAGAT 224525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028991808298480