Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq241 105 5e-18 seq36 105 5e-18 seq7 93.3 3e-14 >seq241 Length=39592 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| ||||| ||||||||||| | |||| ||| || ||||| ||||| Sbjct 21308 GCATACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCT 21367 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 21368 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 21427 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 21428 TCAACGTTTTCACAAATATCTGCATC 21453 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| ||||| ||||||||||| | |||| ||| || ||||| ||||| Sbjct 22590 GCATACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCT 22649 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 22650 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 22709 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 22710 TCAACGTTTTCACAAATATCTGCATC 22735 >seq36 Length=323583 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| ||||| ||||||||||| | |||| ||| || ||||| ||||| Sbjct 17972 GCATACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCT 17913 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 17912 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 17853 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 17852 TCAACGTTTTCACAAATATCTGCATC 17827 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| |||||||||| ||| || ||||| | |||| ||| ||||| || ||| || Sbjct 41254 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 41313 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 ||||||| | | | || |||| ||| || |||| || || |||||||| || | Sbjct 41314 TTTTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 41373 Query 48745 AAGTTTTTACAAAAATCTGCAT 48766 | ||||| |||||||||||||| Sbjct 41374 ATGTTTTCACAAAAATCTGCAT 41395 >seq7 Length=540297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| ||| ||| ||| Sbjct 87822 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 87881 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| |||| | || || || Sbjct 87882 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 87941 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 87942 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 88001 Query 9255 TCCCACCGG 9263 || || || Sbjct 88002 GCCGACAGG 88010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910895321896