Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq35 336 1e-86
seq315 118 7e-21
seq241 116 2e-20
seq4683 111 1e-18
seq32 109 4e-18
seq1 96.9 2e-14
seq177 93.3 3e-13
seq39 91.5 1e-12
seq36 89.7 3e-12
>seq35
Length=333556
Score = 336 bits (372), Expect = 1e-86
Identities = 444/611 (73%), Gaps = 11/611 (2%)
Strand=Plus/Plus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 290883 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 290942
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 290943 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 291002
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || |||| || ||||||||||| || ||| |||||| ||| |
Sbjct 291003 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 291062
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 291063 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 291122
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || | || || | ||| |||||
Sbjct 291123 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 291182
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 291183 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 291240
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732
| ||||| |||| || ||||| |||| || |||| ||| | ||| || || |
Sbjct 291241 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 291298
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 291299 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 291358
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||
Sbjct 291359 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 291418
Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909
| |||||||||| ||||||| || || | ||| ||||||| | || |||||
Sbjct 291419 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 291478
Query 474910 TTGTGGAGGTA 474920
| |||| ||||
Sbjct 291479 TGGTGGTGGTA 291489
>seq315
Length=12309
Score = 118 bits (130), Expect = 7e-21
Identities = 114/144 (79%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 11869 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 11928
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 11929 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCC 11987
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|||||| |||||||| ||||||||
Sbjct 11988 GGTGAGGGTCTTAACAAAAATTTG 12011
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 11026 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 11085
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 11086 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 11144
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||||||||||||
Sbjct 11145 CGGTAAGAGTCTTAACGAAAATTTG 11169
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 11588 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 11647
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 11648 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 11706
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||||||||||||
Sbjct 11707 CGGTAAGAGTCTTAACGAAAATTTG 11731
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 11307 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 11366
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 11367 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 11425
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 11426 AGTAAGGGTCTTAACGAAAATTTG 11449
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 12149 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 12208
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 12209 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 12267
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 12268 AGTAAGGGTCTTAACGAAAATTTG 12291
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || |||||||| || |
Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 7554 GTCTTAACGAAAATTTG 7570
Score = 105 bits (116), Expect = 4e-17
Identities = 106/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || ||||||| |||||
Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAA--TTTTGC 6927
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 6928 CTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 6988 GTCTTAACGAAAATTTG 7004
Score = 102 bits (112), Expect = 5e-16
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 7143 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 7202
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 7203 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 7261
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 7262 CAGTAAGAGTCTTAACAAAAATTTG 7286
Score = 102 bits (112), Expect = 5e-16
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | ||| |||||||| || |||||||| || || ||||||||
Sbjct 7709 TTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 7768
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| |
Sbjct 7769 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTC 7827
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||||||||| ||||||||
Sbjct 7828 CAGTAAGAGTCTTAACAAAAATTTG 7852
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 9080 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 9139
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 9140 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 9199
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 9200 AGTCAGAGTTTTGACAAATATCTG 9223
>seq241
Length=39592
Score = 116 bits (128), Expect = 2e-20
Identities = 110/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 18828
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 18829 AGTCTTAACGAAAATTTG 18846
Score = 114 bits (126), Expect = 8e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | ||| |||||||| || |||||||| || || ||||||||
Sbjct 18421 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 18480
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746
||| ||| ||| ||| || ||||||| || ||| | ||| || ||||| |||
Sbjct 18481 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCG 18540
Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769
|| ||||||||||| ||||||||
Sbjct 18541 GTAAGAGTCTTAACAAAAATTTG 18563
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 19830 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 19889
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 19890 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 19948
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||||||||||||
Sbjct 19949 CGGTAAGAGTCTTAACGAAAATTTG 19973
Score = 114 bits (126), Expect = 8e-20
Identities = 114/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 20392 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 20451
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| ||| ||| || || ||||||| || | | || ||| ||| || ||||| |
Sbjct 20452 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 20510
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||||||||||||
Sbjct 20511 CGGTAAGAGTCTTAACGAAAATTTG 20535
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 19549 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 19608
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 19609 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 19667
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 19668 AGTAAGGGTCTTAACGAAAATTTG 19691
Score = 113 bits (124), Expect = 3e-19
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||||||||| || || ||
Sbjct 20673 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 20732
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| |||||| ||||||| || | | || ||| || || ||||| ||
Sbjct 20733 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 20791
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 20792 AGTAAGGGTCTTAACGAAAATTTG 20815
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| || || ||
Sbjct 17642 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 17700
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 17701 GGTCTTAACAAAAATTTG 17718
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || |
Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 17983
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 17984 AGTCTTAACAAAAATTTG 18001
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || || |
Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 19393
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 19394 AGTCTTAACGAAAATTTG 19411
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||| || || |||||||| ||| |
Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| ||| || ||||||| || | | || ||| || || ||||| || || ||
Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCCAGTAAG 20235
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 20236 GGTCTTAACGAAAATTTG 20253
Score = 107 bits (118), Expect = 1e-17
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| || || ||||||| || ||| | ||| || ||||| ||||| |||
Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899
Query 480753 GTCTTAACGAAAATTTG 480769
|||||||||||||||||
Sbjct 26898 GTCTTAACGAAAATTTG 26882
Score = 102 bits (112), Expect = 5e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || ||||| |||||||| || || ||
Sbjct 18985 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTAT 19044
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| || || ||||||| || ||| | ||| || ||||| ||
Sbjct 19045 TTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 19104
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||||||||| ||||||||
Sbjct 19105 GGTAAGAGTCTTAACAAAAATTTG 19128
Score = 96.9 bits (106), Expect = 2e-14
Identities = 109/145 (75%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| | |||||||||||| || ||||| |||||||| || || ||
Sbjct 18140 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTAT 18199
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAG-TTTTAC 480744
|| ||| ||| || || ||||||| || ||| | ||| || | |||| |
Sbjct 18200 TTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTTGC 18259
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||||||
Sbjct 18260 CGGTAAGAGTCTTAACAAAAATTTG 18284
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| |
Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 21433 GTTTTCACAAATATCTG 21449
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 21638 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 21697
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 21698 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 21757
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 21758 AGTTAGAGTTTTGACAAATATCTG 21781
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| |
Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 22715 GTTTTCACAAATATCTG 22731
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 22920 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 22979
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 22980 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 23039
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 23040 AGTCAGAGTTTTCACAAATATCTG 23063
>seq4683
Length=240
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || || |
Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 121
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 122 AGTCTTAACGAAAATTTG 139
>seq32
Length=336299
Score = 109 bits (120), Expect = 4e-18
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 284630 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTAAAAATGAAA 284571
Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756
||| || ||| | ||| | || ||||||| | |||| || | || ||||||||
Sbjct 284570 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 284512
Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816
||||| || ||| | ||||||||||| || |||||||| || | ||||| ||||||||
Sbjct 284511 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 284452
Query 474817 TGTTTTACGTATTATTAATGAACC 474840
|||| | || || || || || ||
Sbjct 284451 TGTTGTTCGAATCATCAACGAGCC 284428
Score = 89.7 bits (98), Expect = 3e-12
Identities = 241/366 (66%), Gaps = 6/366 (2%)
Strand=Plus/Minus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
||||| || |||||||| || || || ||||| ||||| || | || | || ||| ||
Sbjct 283682 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 283623
Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
|| ||| ||| | || |||| || | ||||| | ||| | | || || ||
Sbjct 283622 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 283569
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
||||| || || || | ||||| || || ||| ||| ||||| | || |||
Sbjct 283568 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 283509
Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032
||||| | |||| ||| | | || ||||| | || || || || ||| | ||
Sbjct 283508 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 283449
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
||||| ||| || | | || ||||| ||| | ||||| | || |||| ||
Sbjct 283448 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGACCGGC 283389
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
|| ||||| ||||| | || || || |||||||||||||| || ||||| || | ||
Sbjct 283388 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGTGAAC 283329
Query 476153 GGTATT 476158
|| |||
Sbjct 283328 GGCATT 283323
>seq1
Length=1490669
Score = 96.9 bits (106), Expect = 2e-14
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| |||| ||||| |||||||| | || || ||| |||||||
Sbjct 1437566 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 1437625
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 1437626 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 1437684
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 1437685 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 1437744
Query 296254 TATAAAGAGATTATTGATCC 296273
|| ||||| | ||||||||
Sbjct 1437745 TACAAAGAAGTCATTGATCC 1437764
>seq177
Length=86949
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 6456 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 6515
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||||||| | || | || || | ||||
Sbjct 6516 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 6575
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 6576 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 6619
>seq39
Length=312045
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 224614 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 224555
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 224554 AATGGTATAGTTCATGTCAGTGCTCGAGAT 224525
>seq36
Length=323583
Score = 89.7 bits (98), Expect = 3e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| ||||||||||| |||||||||||||| || |||||||| || || || |||||
Sbjct 17642 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 17583
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || ||| |||||| || || | | || ||| || ||||| ||||| ||
Sbjct 17582 TTTACCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 17523
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || || ||
Sbjct 17522 AGTCAGAGTTTTCACAAATATCTG 17499
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| |
Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 17847 GTTTTCACAAATATCTG 17831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267932468811296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |