Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq36 118 2e-21
seq3982 116 5e-21
seq241 114 2e-20
seq315 109 8e-19
>seq36
Length=323583
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 41396 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCGTC 41337
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || ||
Sbjct 41336 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 41277
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 41276 GCAACGATTGATATTTGCTGGTA 41254
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 41681 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 41622
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 41621 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 41562
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 41561 CAACGATTGATATTTGCTGGTA 41540
Score = 109 bits (120), Expect = 8e-19
Identities = 122/162 (75%), Gaps = 1/162 (1%)
Strand=Plus/Minus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 42122 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 42064
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || ||| || |||| |||||| || ||||| ||||||
Sbjct 42063 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 42004
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969
|| ||||| || || |||||||| || | ||| ||||| |||
Sbjct 42003 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAATCAG 41962
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 17828 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 17887
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 17888 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 17947
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | |||||| ||| |||| ||
Sbjct 17948 CAGCGGCTGATTTTTGCTGGTATGC 17972
>seq3982
Length=267
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||
Sbjct 1 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 60
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 61 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 120
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 121 CAACGATTGATATTTGCTGGTA 142
>seq241
Length=39592
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 20819 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20760
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || ||
Sbjct 20759 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 20700
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 20699 ACAACGTTTGATTTTTGCTGGTAAGCAG 20672
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 19695 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19636
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 19635 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 19576
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 19575 ACAACGTTTGATTTTTGCTGGTAAGCAG 19548
Score = 105 bits (116), Expect = 1e-17
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || |||||||| ||| ||
Sbjct 18567 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 18508
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 18507 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 18448
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
||| | ||||||| ||| |||||||||
Sbjct 18447 ACAGCGTTTGATTTTTGCTGGTAAGCAG 18420
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 21452 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 21393
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 21392 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 21333
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | |||||| ||| |||| ||
Sbjct 21332 CAGCGGCTGATTTTTGCTGGTATGC 21308
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 22734 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 22675
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 22674 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 22615
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | |||||| ||| |||| ||
Sbjct 22614 CAGCGGCTGATTTTTGCTGGTATGC 22590
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 20257 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20198
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 20197 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20138
Query 155942 ACAAAGATTGATTTATGCCGGTAAGC 155967
|||| | ||||||| ||| ||| |||
Sbjct 20137 ACAACGTTTGATTTTTGCTGGTGAGC 20112
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| ||| ||
Sbjct 18005 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17946
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 17945 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17886
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 17885 GCAACGTCTGATTTTTGCTGGTA 17863
>seq315
Length=12309
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 11453 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 11394
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 11393 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 11334
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 11333 ACAACGTTTGATTTTTGCTGGTAAGCAG 11306
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 12295 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 12236
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 12235 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 12176
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 12175 ACAACGTTTGATTTTTGCTGGTAAGCAG 12148
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 7290 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7231
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 7230 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7171
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| | ||||| | ||| ||||||
Sbjct 7170 ACAGCGTTTGATATTTGCTGGTAAG 7146
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 7856 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7797
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 7796 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7737
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
||| | ||||| | ||| ||||||
Sbjct 7736 ACAGCGTTTGATATTTGCTGGTAAG 7712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731819378403200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |