Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq36 118 2e-21 seq3982 116 5e-21 seq241 114 2e-20 seq315 109 8e-19 >seq36 Length=323583 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 41396 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCGTC 41337 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || |||| |||||| |||||||| |||||||| || || || || Sbjct 41336 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 41277 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 41276 GCAACGATTGATATTTGCTGGTA 41254 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 41681 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 41622 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 41621 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 41562 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 41561 CAACGATTGATATTTGCTGGTA 41540 Score = 109 bits (120), Expect = 8e-19 Identities = 122/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| || Sbjct 42122 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 42064 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| || || | || ||| || |||| |||||| || ||||| |||||| Sbjct 42063 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 42004 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || ||||| || || |||||||| || | ||| ||||| ||| Sbjct 42003 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAATCAG 41962 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 17828 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 17887 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 17888 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 17947 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | |||||| ||| |||| || Sbjct 17948 CAGCGGCTGATTTTTGCTGGTATGC 17972 >seq3982 Length=267 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || || Sbjct 1 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 61 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 120 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 121 CAACGATTGATATTTGCTGGTA 142 >seq241 Length=39592 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 20819 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20760 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || || || || Sbjct 20759 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 20700 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 20699 ACAACGTTTGATTTTTGCTGGTAAGCAG 20672 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 19695 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19636 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 19635 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 19576 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 19575 ACAACGTTTGATTTTTGCTGGTAAGCAG 19548 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || |||||||| ||| || Sbjct 18567 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 18508 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 18507 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 18448 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||||| ||| ||||||||| Sbjct 18447 ACAGCGTTTGATTTTTGCTGGTAAGCAG 18420 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 21452 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 21393 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 21392 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 21333 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | |||||| ||| |||| || Sbjct 21332 CAGCGGCTGATTTTTGCTGGTATGC 21308 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 22734 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 22675 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| ||| Sbjct 22674 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 22615 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | |||||| ||| |||| || Sbjct 22614 CAGCGGCTGATTTTTGCTGGTATGC 22590 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 20257 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20198 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 20197 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20138 Query 155942 ACAAAGATTGATTTATGCCGGTAAGC 155967 |||| | ||||||| ||| ||| ||| Sbjct 20137 ACAACGTTTGATTTTTGCTGGTGAGC 20112 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | || || ||||| || || || ||||| ||| || Sbjct 18005 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17946 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 17945 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17886 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 17885 GCAACGTCTGATTTTTGCTGGTA 17863 >seq315 Length=12309 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 11453 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 11394 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 11393 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 11334 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 11333 ACAACGTTTGATTTTTGCTGGTAAGCAG 11306 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 12295 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 12236 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 12235 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 12176 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 12175 ACAACGTTTGATTTTTGCTGGTAAGCAG 12148 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 7290 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7231 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 7230 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7171 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 7170 ACAGCGTTTGATATTTGCTGGTAAG 7146 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| || Sbjct 7856 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7797 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 7796 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7737 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 7736 ACAGCGTTTGATATTTGCTGGTAAG 7712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731819378403200