Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq36 127 4e-24
seq241 123 5e-23
seq3982 122 2e-22
seq315 118 2e-21
seq4683 109 1e-18
>seq36
Length=323583
Score = 127 bits (140), Expect = 4e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 41254 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 41313
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || ||||| |||| |||||||| | || || ||||| |||||||
Sbjct 41314 TTTTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 41373
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | || |||||||||
Sbjct 41374 ATGTTTTCACAAAAATCTGCATT 41396
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 41540 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 41599
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || |||||||| | |||||||| | || || ||||| |||||||
Sbjct 41600 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 41659
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 41660 ATGTTTTCACAAAAATCTGCAT 41681
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || |||
Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATT 42022
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
||| |||| ||||| || || ||||| | ||| |||||||| || || ||||| |||
Sbjct 42023 TTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCA 42082
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||| || | ||||||||||||
Sbjct 42083 GTAAGTGTCTTCACGAATATCTGCAT 42108
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 17969 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 17910
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 17909 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 17850
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 17849 ACGTTTTCACAAATATCTGCAT 17828
>seq241
Length=39592
Score = 123 bits (136), Expect = 5e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| ||||||
Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTT 21787
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 19546 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 19605
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 19606 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19665
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 19666 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19695
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 21311 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 21370
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 21371 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 21430
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 21431 ACGTTTTCACAAATATCTGCAT 21452
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 22593 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 22652
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 22653 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 22712
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 22713 ACGTTTTCACAAATATCTGCAT 22734
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 19827 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 19886
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 19887 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 19946
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| ||| || ||||||
Sbjct 19947 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 19977
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 20389 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 20448
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 20449 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 20508
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| ||| || ||||||
Sbjct 20509 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 20539
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | |||||| || ||||| ||||| |||||||||||
Sbjct 18418 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 18477
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||||| || || |||||
Sbjct 18478 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 18537
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 18538 CCGGTAAGAGTCTTAACAAAAATTTGCATT 18567
Score = 113 bits (124), Expect = 8e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988
|||||||||||| || | ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 20116 ACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCC 20175
Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048
||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| ||||| |
Sbjct 20176 TTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAG 20235
Query 172049 TGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 20236 GGTCTTAACGAAAATTTGCATT 20257
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| |||||||| ||||| |||
Sbjct 20670 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 20729
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| || ||||| || | ||||||||| | ||| || |||||
Sbjct 20730 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20789
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 20790 CCAGTAAGGGTCTTAACGAAAATTTGCATT 20819
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 19273 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 19332
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 19333 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 19392
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 19393 GAGTCTTAACGAAAATTTGCATT 19415
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 18708 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18767
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 18768 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 18827
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 18828 GAGTCTTAACGAAAATTTGCATT 18850
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| || ||||| ||||| ||
Sbjct 18982 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTG 19041
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||| ||||| ||| ||||| || | ||||||||||| || || |||||
Sbjct 19042 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 19101
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 19102 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 19132
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| |||||||| ||||| ||||||||
Sbjct 27020 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26961
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 26960 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 26901
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 26900 GAGTCTTAACGAAAATTTGCATT 26878
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||||||||||||||| |||||
Sbjct 17863 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17922
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 17923 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17982
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 17983 GAGTCTTAACAAAAATTTGCATT 18005
Score = 100 bits (110), Expect = 5e-16
Identities = 114/152 (75%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| || ||||| ||||| ||
Sbjct 18137 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTG 18196
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT-GGTTT 172038
|||||| ||| ||||| ||| ||||| || | ||||||||||| || || | |||
Sbjct 18197 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 18256
Query 172039 TACCAGTTAATGTTTTAATGAATATCTGCATT 172070
| || || | || |||| || || ||||||
Sbjct 18257 TGCCGGTAAGAGTCTTAACAAAAATTTGCATT 18288
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || || || ||||| || |||||||| || ||
Sbjct 17580 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17639
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| | |||||| || | ||| ||||| | || |||||||| |||||||
Sbjct 17640 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17699
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 17700 GGGTCTTAACAAAAATTTGCATT 17722
>seq3982
Length=267
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || |||||||| || ||||| |||||||| ||||||
Sbjct 142 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 83
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || |||||||| | |||||||| | || || ||||| |||||||
Sbjct 82 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 23
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 22 ATGTTTTCACAAAAATCTGCAT 1
>seq315
Length=12309
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203
Query 172047 AATGTTTTAATGAATATCTGCATTT 172071
| ||||| | |||||||||||||
Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 11304 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 11363
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 11364 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 11423
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 11424 CCAGTAAGGGTCTTAACGAAAATTTGCATT 11453
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 12146 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 12205
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 12206 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 12265
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| ||| || ||||||
Sbjct 12266 CCAGTAAGGGTCTTAACGAAAATTTGCATT 12295
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||||||||| || || | |||||| || ||||| ||||| |||||||||||
Sbjct 7140 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7199
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 7200 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7259
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 7260 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 7290
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||||||||| || || | |||||| || ||||| ||||| |||||||||||
Sbjct 7706 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7765
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 7766 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7825
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 7826 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 7856
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 11023 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 11082
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 11083 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 11142
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| ||| || ||||||
Sbjct 11143 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 11173
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||
Sbjct 11585 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 11644
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| ||||||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 11645 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 11704
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| ||| || ||||||
Sbjct 11705 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 11735
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| ||||||||||| |||||
Sbjct 7432 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 7491
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 7492 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 7551
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 7552 GAGTCTTAACGAAAATTTGCATT 7574
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| |||||||| ||||| |||
Sbjct 11866 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 11925
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| || ||||| || | ||| ||||| | || ||||||||
Sbjct 11926 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTG 11985
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 11986 CCGGTGAGGGTCTTAACAAAAATTTGCATT 12015
Score = 93.3 bits (102), Expect = 8e-14
Identities = 107/143 (75%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| ||||||||||| |||| |
Sbjct 6868 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTT--T 6925
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||| ||| ||||| || | ||||||||||| || || ||||| || || |
Sbjct 6926 GCCTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 6985
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 6986 GAGTCTTAACGAAAATTTGCATT 7008
>seq4683
Length=240
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 1 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 60
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 61 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 120
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 121 GAGTCTTAACGAAAATTTGCATT 143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905070920721600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |