Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq36 127 4e-24 seq241 123 5e-23 seq3982 122 2e-22 seq315 118 2e-21 seq4683 109 1e-18 >seq36 Length=323583 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || |||||||| || ||||| |||||||| |||||| Sbjct 41254 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 41313 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || ||||| |||| |||||||| | || || ||||| ||||||| Sbjct 41314 TTTTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 41373 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||||| | || ||||||||| Sbjct 41374 ATGTTTTCACAAAAATCTGCATT 41396 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || |||||||| || ||||| |||||||| |||||| Sbjct 41540 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 41599 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| ||||| || |||||||| | |||||||| | || || ||||| ||||||| Sbjct 41600 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 41659 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||||||| Sbjct 41660 ATGTTTTCACAAAAATCTGCAT 41681 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATT 42022 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| |||| ||||| || || ||||| | ||| |||||||| || || ||||| ||| Sbjct 42023 TTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCA 42082 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || | |||||||||||| Sbjct 42083 GTAAGTGTCTTCACGAATATCTGCAT 42108 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 17969 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 17910 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 17909 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 17850 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 17849 ACGTTTTCACAAATATCTGCAT 17828 >seq241 Length=39592 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || ||||| | ||| ||||| |||||||||||||| |||||| Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTT 21787 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 19546 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 19605 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 19606 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 19665 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 19666 CCAGTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 21311 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 21370 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 21371 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 21430 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 21431 ACGTTTTCACAAATATCTGCAT 21452 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 22593 TACCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 22652 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 22653 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 22712 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 22713 ACGTTTTCACAAATATCTGCAT 22734 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| || Sbjct 19827 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 19886 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 19887 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 19946 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| ||| || |||||| Sbjct 19947 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 19977 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| || Sbjct 20389 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 20448 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 20449 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 20508 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| ||| || |||||| Sbjct 20509 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 20539 Score = 113 bits (124), Expect = 8e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | |||||| || ||||| ||||| ||||||||||| Sbjct 18418 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 18477 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||||| || || ||||| Sbjct 18478 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 18537 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| || || |||||| Sbjct 18538 CCGGTAAGAGTCTTAACAAAAATTTGCATT 18567 Score = 113 bits (124), Expect = 8e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 |||||||||||| || | ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 20116 ACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCC 20175 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| ||||| | Sbjct 20176 TTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAG 20235 Query 172049 TGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 20236 GGTCTTAACGAAAATTTGCATT 20257 Score = 113 bits (124), Expect = 8e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||| Sbjct 20670 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 20729 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| || ||||| || | ||||||||| | ||| || ||||| Sbjct 20730 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 20789 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 20790 CCAGTAAGGGTCTTAACGAAAATTTGCATT 20819 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 19273 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 19332 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 19333 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 19392 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 19393 GAGTCTTAACGAAAATTTGCATT 19415 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||||||||||||||| ||||| Sbjct 18708 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 18767 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 18768 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 18827 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 18828 GAGTCTTAACGAAAATTTGCATT 18850 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| || ||||| ||||| || Sbjct 18982 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTG 19041 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||| ||||| ||| ||||| || | ||||||||||| || || ||||| Sbjct 19042 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 19101 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| || || |||||| Sbjct 19102 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 19132 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||| ||||| |||||||| Sbjct 27020 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 26961 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||||| || || ||||| || || | Sbjct 26960 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 26901 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 26900 GAGTCTTAACGAAAATTTGCATT 26878 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||||||||||||||| ||||| Sbjct 17863 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 17922 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 17923 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 17982 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 17983 GAGTCTTAACAAAAATTTGCATT 18005 Score = 100 bits (110), Expect = 5e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| || ||||| ||||| || Sbjct 18137 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTG 18196 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT-GGTTT 172038 |||||| ||| ||||| ||| ||||| || | ||||||||||| || || | ||| Sbjct 18197 TATTTTGCCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 18256 Query 172039 TACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || | || |||| || || |||||| Sbjct 18257 TGCCGGTAAGAGTCTTAACAAAAATTTGCATT 18288 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || || || ||||| || |||||||| || || Sbjct 17580 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 17639 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| | |||||| || | ||| ||||| | || |||||||| ||||||| Sbjct 17640 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 17699 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 17700 GGGTCTTAACAAAAATTTGCATT 17722 >seq3982 Length=267 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || |||||||| || ||||| |||||||| |||||| Sbjct 142 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 83 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| ||||| || |||||||| | |||||||| | || || ||||| ||||||| Sbjct 82 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 23 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||||||| Sbjct 22 ATGTTTTCACAAAAATCTGCAT 1 >seq315 Length=12309 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 172047 AATGTTTTAATGAATATCTGCATTT 172071 | ||||| | ||||||||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 11304 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 11363 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 11364 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 11423 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 11424 CCAGTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 12146 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 12205 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 12206 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 12265 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 12266 CCAGTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||||||||| || || | |||||| || ||||| ||||| ||||||||||| Sbjct 7140 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7199 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 7200 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7259 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| || || |||||| Sbjct 7260 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 7290 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||||||||| || || | |||||| || ||||| ||||| ||||||||||| Sbjct 7706 CAATTACTTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 7765 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 7766 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 7825 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| || || |||||| Sbjct 7826 TCCAGTAAGAGTCTTAACAAAAATTTGCATT 7856 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| || Sbjct 11023 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 11082 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 11083 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 11142 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| ||| || |||||| Sbjct 11143 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 11173 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| || Sbjct 11585 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 11644 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 11645 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 11704 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| ||| || |||||| Sbjct 11705 GCCGGTAAGAGTCTTAACGAAAATTTGCATT 11735 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 7432 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 7491 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||||| || || ||||| || || | Sbjct 7492 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 7551 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 7552 GAGTCTTAACGAAAATTTGCATT 7574 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| |||||||| ||||| ||| Sbjct 11866 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 11925 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| || ||||| || | ||| ||||| | || |||||||| Sbjct 11926 ATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTG 11985 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| || || |||||| Sbjct 11986 CCGGTGAGGGTCTTAACAAAAATTTGCATT 12015 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||| ||||||||||| |||| | Sbjct 6868 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTT--T 6925 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||| ||| ||||| || | ||||||||||| || || ||||| || || | Sbjct 6926 GCCTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 6985 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 6986 GAGTCTTAACGAAAATTTGCATT 7008 >seq4683 Length=240 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 1 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGC 60 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 61 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 120 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 121 GAGTCTTAACGAAAATTTGCATT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905070920721600