Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq88 87.8 5e-12
>seq88
Length=174695
Score = 87.8 bits (96), Expect = 5e-12
Identities = 165/239 (69%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666
||||||| || ||||| || || ||||| |||||||| | ||||| ||||| | ||
Sbjct 84845 ACCAGTTTCAGCGGTTTTAACCGCAGTATCGATTAGACCTTCTCGACCGCCCATTGTGTG 84904
Query 302667 GAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGC 302724
|||||| | || |||| || |||| |||| | || | | ||||||||||| ||
Sbjct 84905 GAAGAAAAATTCGGACGGT-GTCAAGCCGGCCAA-ATAGCTGTTTTCAACGAAACCCCGA 84962
Query 302725 GCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784
|||||| | |||| ||| | || || |||| || | | ||||| |
Sbjct 84963 CTCTCGGGTCCGTAGTCGTCTTTGATGAAATGAGGCAACGTGCGATGGCGGAAGCCGAAC 85022
Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||||| ||||| || || ||||||||||| || | ||| | |||| |||||||| ||
Sbjct 85023 GGGATGCGCTTGCCTTCGACGTTCTGCTGACCAACGCAGGCTATCACTTGCGAAATGTT 85081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471709130722424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |