Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq3982 114 2e-20
seq36 114 2e-20
seq241 111 2e-19
seq315 100 4e-16
>seq3982
Length=267
Score = 114 bits (126), Expect = 2e-20
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090
|||| || || | ||||||||||| ||||||||||| || | || ||||| ||| |
Sbjct 2 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 60
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| |||||
Sbjct 61 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 120
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
||| || | || ||||| ||||
Sbjct 121 CAACGATTGATATTTGCTGGTA 142
>seq36
Length=323583
Score = 114 bits (126), Expect = 2e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 41394 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCGTCTG 41335
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| |
Sbjct 41334 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 41275
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 41274 AACGATTGATATTTGCTGGTA 41254
Score = 114 bits (126), Expect = 2e-20
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| || || | ||||||||||| ||||||||||| || | || ||||| | || |
Sbjct 41680 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 41622
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| |||||
Sbjct 41621 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 41562
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
||| || | || ||||| ||||
Sbjct 41561 CAACGATTGATATTTGCTGGTA 41540
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 17829 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 17888
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||||||||| |||||||
Sbjct 17889 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAAC 17948
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 17949 AGCGGCTGATTTTTGCTGGTA 17969
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/146 (76%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| |||||| | || ||| | || |||||||| || || | || || |||| || |
Sbjct 42107 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 42049
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || ||||||| |||| |||||| || ||| ||||||||||| || |||||
Sbjct 42048 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 41989
Query 146151 CAAAGACTCATTTTTGCAGGTAAACA 146176
|||||| | || ||||||||||| ||
Sbjct 41988 CAAAGATTAATCTTTGCAGGTAATCA 41963
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 17497 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 17556
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 17557 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 17616
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 17617 AACGTCTGATTTTTGCTGGTAA 17638
>seq241
Length=39592
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 21451 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 21392
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||||||||| |||||||
Sbjct 21391 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAAC 21332
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 21331 AGCGGCTGATTTTTGCTGGTA 21311
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 22733 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 22674
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||||||||| |||||||
Sbjct 22673 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAAC 22614
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 22613 AGCGGCTGATTTTTGCTGGTA 22593
Score = 105 bits (116), Expect = 1e-17
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 20817 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 20758
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| |||||||
Sbjct 20757 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 20698
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 20697 AACGTTTGATTTTTGCTGGTAAGCAGTT 20670
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 19693 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 19634
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 19633 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 19574
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 19573 AACGTTTGATTTTTGCTGGTAAGCAGTT 19546
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| |||| || ||||| |||||| | || || |||| |
Sbjct 21783 TGCAGATATTTGTCAAAACTCTAACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 21724
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 21723 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 21664
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 21663 AACGTCTGATTTTTGCTGGTAA 21642
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 20255 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 20196
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 20195 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 20136
Query 146152 AAAGACTCATTTTTGCAGGT 146171
|| | | |||||||| |||
Sbjct 20135 AACGTTTGATTTTTGCTGGT 20116
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 23065 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 23006
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 23005 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 22946
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 22945 AACGTCTGATTTTTGCTGGTAA 22924
>seq315
Length=12309
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 11451 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 11392
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 11391 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 11332
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 11331 AACGTTTGATTTTTGCTGGTAAGCAGTT 11304
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 12293 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 12234
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 12233 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 12174
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 12173 AACGTTTGATTTTTGCTGGTAAGCAGTT 12146
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 9225 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 9166
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 9165 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 9106
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 9105 AACGTCTGATTTTTGCTGGTAA 9084
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 7288 TGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 7229
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 7228 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 7169
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
| | | || ||||| ||||| ||||
Sbjct 7168 AGCGTTTGATATTTGCTGGTAAGTAATT 7141
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 7854 TGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 7795
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 7794 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 7735
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
| | | || ||||| ||||| ||||
Sbjct 7734 AGCGTTTGATATTTGCTGGTAAGTAATT 7707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786109874635840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |