Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq241 111 1e-19
seq36 105 5e-18
seq315 104 2e-17
>seq241
Length=39592
Score = 111 bits (122), Expect = 1e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || |||| ||||| ||||| || ||||| ||||||
Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTT 21787
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || |||| ||||| ||||| || ||||| |||||
Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | || ||||| || ||||| || ||||||||||| | || |
Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 21433 GTTTTCACAAATATCTGCAT 21452
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | || ||||| || ||||| || ||||||||||| | || |
Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 22715 GTTTTCACAAATATCTGCAT 22734
>seq36
Length=323583
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || |||| ||||| ||||| || ||||| |||||
Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
|| || || ||| | || |||||||||||||| || ||||| || || || || || | |
Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATT 42022
Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
|| ||| ||| |||| | ||||| || |||| ||||| || ||||||||||| |||
Sbjct 42023 TTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCA 42082
Query 29761 GTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||||||
Sbjct 42083 GTAAGTGTCTTCACGAATATCTGCAT 42108
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | || ||||| || ||||| || ||||||||||| | || |
Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 17847 GTTTTCACAAATATCTGCAT 17828
>seq315
Length=12309
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || |||| ||||| ||||| || ||||| |||||
Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203
Query 29764 AAGGTTTTAACAAATATCTGCATTT 29788
| ||||| ||||||||||||||||
Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385192195171032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |