Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq35 345 3e-89 seq32 138 8e-27 seq2 105 5e-17 >seq35 Length=333556 Score = 345 bits (382), Expect = 3e-89 Identities = 497/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 291594 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 291535 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 291534 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 291475 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 291474 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 291415 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 291414 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 291355 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 291354 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 291295 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 291294 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 291235 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 291234 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 291175 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 ||| | || |||| ||| |||||||||| ||||||||| || || || |||| Sbjct 291174 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 291115 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 291114 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 291055 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 291054 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 290995 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 290994 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 290935 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 290934 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 290894 Score = 114 bits (126), Expect = 1e-19 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 292060 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 292001 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 292000 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 291942 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 291941 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 291882 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 291881 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 291822 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | ||||| |||||| Sbjct 291821 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 291780 >seq32 Length=336299 Score = 138 bits (152), Expect = 8e-27 Identities = 343/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 284428 GGCTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 284487 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| || ||||| || | ||||||| | | |||||||| Sbjct 284488 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 284547 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 284548 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTTAACAAAACCATCGCTGAAATTTCTTCG 284607 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 284608 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 284663 Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 284664 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 284723 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722 |||| ||| | | || |||||||| || | ||||| ||||| | || | | Sbjct 284724 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 284782 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 284783 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 284842 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 284843 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 284902 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 | || ||| ||| || ||| || |||||| Sbjct 284903 CAAC---ACTGAAAATTATTC--AATTCAATA 284929 >seq2 Length=1069731 Score = 105 bits (116), Expect = 5e-17 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 610530 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 610589 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 ||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 610590 GTAACCCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 610649 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 610650 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 610693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740348001107952