Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq35 345 3e-89
seq32 138 8e-27
seq2 105 5e-17
>seq35
Length=333556
Score = 345 bits (382), Expect = 3e-89
Identities = 497/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 291594 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 291535
Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 291534 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 291475
Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 291474 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 291415
Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 291414 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 291355
Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 291354 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 291295
Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539
| |||||| | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 291294 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 291235
Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 291234 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 291175
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| | || |||| ||| |||||||||| ||||||||| || || || ||||
Sbjct 291174 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 291115
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 291114 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 291055
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||||| ||| || |||||||||||||| |||| || || || || | |||||| ||
Sbjct 291054 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 290995
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 290994 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 290935
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| |||||||| | || || || |||||||| |||||||||
Sbjct 290934 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 290894
Score = 114 bits (126), Expect = 1e-19
Identities = 196/282 (70%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 292060 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 292001
Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 292000 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 291942
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 291941 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 291882
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
||| | | || | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 291881 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 291822
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051
| | ||||||| |||||| | | ||||| ||||||
Sbjct 291821 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 291780
>seq32
Length=336299
Score = 138 bits (152), Expect = 8e-27
Identities = 343/512 (67%), Gaps = 18/512 (4%)
Strand=Plus/Plus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 284428 GGCTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 284487
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||||| |||||| ||||| || ||||| || | ||||||| | | ||||||||
Sbjct 284488 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 284547
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 284548 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTTAACAAAACCATCGCTGAAATTTCTTCG 284607
Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604
|||| | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 284608 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 284663
Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 284664 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 284723
Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722
|||| ||| | | || |||||||| || | ||||| ||||| | || | |
Sbjct 284724 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 284782
Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 284783 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 284842
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || | ||||| || |||||||| |||||||||||||| |||||| | | || |
Sbjct 284843 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 284902
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATA 282871
| || ||| ||| || ||| || ||||||
Sbjct 284903 CAAC---ACTGAAAATTATTC--AATTCAATA 284929
>seq2
Length=1069731
Score = 105 bits (116), Expect = 5e-17
Identities = 124/167 (74%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 610530 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 610589
Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736
||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 610590 GTAACCCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 610649
Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 610650 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 610693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740348001107952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |